Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30876.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...    84   6e-17
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same...    82   2e-16
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)            82   2e-16

>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
           to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
           thaliana]
          Length = 146

 Score = 83.8 bits (198), Expect = 6e-17
 Identities = 37/75 (49%), Positives = 53/75 (70%)
 Frame = +2

Query: 29  QAVQVFGRKKTATAVXYXKXGXGMXRVXGRPLDLVXPXLLQYKLQEPILLLGKEKFSMVX 208
           ++VQ FGRKKTATAV Y K G GM ++ G P++L  P +L++K+ EP+LLLGK +F+ V 
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 209 IXXXVKGGGXVAQVY 253
           +     GGG  ++VY
Sbjct: 68  MRIRATGGGNTSRVY 82



 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 27/47 (57%), Positives = 35/47 (74%)
 Frame = +1

Query: 226 GWWSXSTSLRIRQAISKALIAFXQKYVXXASKKEIKDXLVQYDRSLL 366
           G  + S    IRQ+I+KAL+A+ QKYV   SKKEIKD L++YDR+LL
Sbjct: 74  GGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLL 120



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 16/23 (69%), Positives = 17/23 (73%)
 Frame = +3

Query: 375 PASCEXKKFGGXXGRARYQKSYR 443
           P  CE KKFGG   RAR+QKSYR
Sbjct: 124 PRRCESKKFGGPGARARFQKSYR 146


>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
           GB:Q42340
          Length = 146

 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 38/81 (46%), Positives = 55/81 (67%)
 Frame = +2

Query: 11  ARREPIQAVQVFGRKKTATAVXYXKXGXGMXRVXGRPLDLVXPXLLQYKLQEPILLLGKE 190
           A +   ++VQ FGRKKTA AV + K G G+ ++ G P++L  P +L++K+ EPILLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKH 61

Query: 191 KFSMVXIXXXVKGGGXVAQVY 253
           +F+ V +   V GGG  +QVY
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVY 82



 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 26/37 (70%), Positives = 32/37 (86%)
 Frame = +1

Query: 256 IRQAISKALIAFXQKYVXXASKKEIKDXLVQYDRSLL 366
           IRQ+I+KAL+A+ QKYV   SKKEIKD LV+YDR+LL
Sbjct: 84  IRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLL 120



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 16/23 (69%), Positives = 17/23 (73%)
 Frame = +3

Query: 375 PASCEXKKFGGXXGRARYQKSYR 443
           P  CE KKFGG   R+RYQKSYR
Sbjct: 124 PRRCEPKKFGGRGARSRYQKSYR 146


>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
          Length = 146

 Score = 81.8 bits (193), Expect = 2e-16
 Identities = 37/81 (45%), Positives = 55/81 (67%)
 Frame = +2

Query: 11  ARREPIQAVQVFGRKKTATAVXYXKXGXGMXRVXGRPLDLVXPXLLQYKLQEPILLLGKE 190
           A +   ++VQ FGRKKTA AV + K G G+ ++ G P++L  P +L++K+ EP+LLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKH 61

Query: 191 KFSMVXIXXXVKGGGXVAQVY 253
           +F+ V +   V GGG  +QVY
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVY 82



 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 26/37 (70%), Positives = 32/37 (86%)
 Frame = +1

Query: 256 IRQAISKALIAFXQKYVXXASKKEIKDXLVQYDRSLL 366
           IRQ+I+KAL+A+ QKYV   SKKEIKD LV+YDR+LL
Sbjct: 84  IRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLL 120



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 16/23 (69%), Positives = 17/23 (73%)
 Frame = +3

Query: 375 PASCEXKKFGGXXGRARYQKSYR 443
           P  CE KKFGG   R+RYQKSYR
Sbjct: 124 PRRCEPKKFGGRGARSRYQKSYR 146


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,563,552
Number of Sequences: 28952
Number of extensions: 126122
Number of successful extensions: 224
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)