Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30875.Seq
         (449 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.0  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   5.4  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    20   9.4  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    20   9.4  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    20   9.4  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 101  SQLWKSSSRSPW*TMTES--XGDRRPSSMITPTK 196
            S  W S++ SPW T T +      RP++  T T+
Sbjct: 1040 STWWSSTTTSPWWTTTTTRRTTTTRPTTTSTTTR 1073


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = -1

Query: 179 SMKASCPPTILSSFTMGSLRNSSKVGKLEKSRP----YASCEYSRVN 51
           S  A+CPP+        SL   S  GK +K R     Y+S +  ++N
Sbjct: 91  SYAANCPPSPKDDEKCLSLERPSGGGKGKKMRKPRTIYSSLQLQQLN 137


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 84  SRFLQFPNFGRVPQG 128
           +R+  +PNFG  P G
Sbjct: 174 ARYHPYPNFGVPPAG 188


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 121 GTLPKLGNWRNLDRTQVVNIVEL 53
           GTL  L +W  +D   + N+  L
Sbjct: 67  GTLKILDSWNEIDLHGLENVANL 89


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +1

Query: 181 DYPHQVSFVVNNTYFCGGSIISE 249
           D  HQ S ++NN   C   ++++
Sbjct: 316 DKAHQESIIMNNILPCVKELVAD 338


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,468
Number of Sequences: 336
Number of extensions: 1572
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)