Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30875.Seq
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   3.1  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    25   5.4  
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...    25   7.1  
SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch...    25   7.1  
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    24   9.4  
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma...    24   9.4  

>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +1

Query: 43  FFGLTL-LYSQLAYGLDFSNFP--TLEEFLKEPMVNDDRI 153
           F G+   LY   A+GL F N+P   L  FL+  M  + R+
Sbjct: 546 FLGIVASLYYCFAHGLQFINWPRLLLPSFLRSDMTPEGRV 585


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 85  LDFSNFPTLEEFLKEPMVNDDRIVGGQEAFIDDYPHQVSF-VVNNT 219
           ++    PT++E+L+E   N+D IV      ++ +P  VSF  + NT
Sbjct: 403 MESEKIPTIDEYLQE-YSNEDEIV---LQVLESFPAAVSFSTITNT 444


>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 101 KLEKSRPYASCEYSRVNPKKITKCSE 24
           +++K + Y      RV+P+ + KC E
Sbjct: 75  RVDKEKGYIDLSKRRVSPEDVVKCEE 100


>SPBC1347.09 |||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 284

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 161 PPTILSSFTMGSLRNSSKVGKLEKSRPYASCEYSRVNPKKITK 33
           P +IL+ F   SL N+  +GK + +      +Y R    K  K
Sbjct: 217 PQSILNLFKNASLSNAEVIGKAQANVWVDEAKYQRSTQSKDAK 259


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 178 DDYPHQVSFVVNNTYFCGGSIISENXYXLQXIAL 279
           D Y H+  FV+   +FC  S+IS   Y  + + +
Sbjct: 107 DIYGHKKMFVLGYIWFCIWSLISGFSYYAKSVIM 140


>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 94  SNFPTLEEFLKEPMVNDDRIVGGQEAFIDDYPHQVSFVVNNTYF 225
           S  P+ +EFL + ++N+D    G E+ + D   QV     +T F
Sbjct: 81  SFIPSYDEFLHKKLLNEDT---GHESKVSDQVKQVISTPMSTCF 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,563,066
Number of Sequences: 5004
Number of extensions: 27348
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)