Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30875.Seq
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0387 + 23038490-23038662,23039246-23039303,23039471-230395...    27   5.3  
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997...    27   7.0  
03_06_0290 + 32878040-32880193,32881607-32881720                       27   7.0  
09_04_0279 - 16349156-16349788,16352409-16353344                       27   9.2  
07_03_0583 - 19684388-19684498,19685083-19685216,19685765-196858...    27   9.2  
07_03_0487 - 18663890-18663964,18664286-18664441,18664693-186652...    27   9.2  
05_03_0263 + 11234850-11235044,11235413-11237341                       27   9.2  

>11_06_0387 +
           23038490-23038662,23039246-23039303,23039471-23039551,
           23039640-23039675,23039821-23040060,23040155-23040293,
           23041417-23041889
          Length = 399

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = -1

Query: 182 SSMKASCPPTILSSFTMG--SLRNSSKVGKLEKSR-PYASCEYSRVNPKKI-TKCSEDSI 15
           S +K S PP ILS  T G  S  ++  +GK E  R  Y    YS V+   I   CSED  
Sbjct: 151 SVLKMSQPPRILSWMTRGIASGLDTLFIGKFEAQRAEYWDTLYSSVHVGPILIFCSEDDE 210

Query: 14  L 12
           L
Sbjct: 211 L 211


>09_06_0320 -
           22297579-22297760,22298433-22299358,22299422-22299747,
           22300591-22300660,22301632-22301726,22301917-22302048,
           22302154-22302222,22302953-22303051,22303169-22303253,
           22303353-22303453,22303660-22303728,22303861-22303901,
           22304085-22304303,22304444-22304470,22304562-22304660,
           22304898-22305106,22305382-22305485,22305753-22305894,
           22305991-22306289,22306508-22306903
          Length = 1229

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 246 ADDXAAAKIRIVHHKRYLVGVIIDEGLLSPXDSVI 142
           +DD  +  +R    + YLV +I D G LS  DS +
Sbjct: 300 SDDATSCLVRFGLEREYLVDLIGDPGQLSDPDSFV 334


>03_06_0290 + 32878040-32880193,32881607-32881720
          Length = 755

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/30 (40%), Positives = 22/30 (73%)
 Frame = -3

Query: 195 LVGVIIDEGLLSPXDSVIVYHGLLEELFQS 106
           L+ V+  +G++SP  S I+ +GL++E F+S
Sbjct: 642 LLTVVNMDGMMSPRISNIIIYGLIKEGFKS 671


>09_04_0279 - 16349156-16349788,16352409-16353344
          Length = 522

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = -3

Query: 282 SESNGLXXIXVLADDXAAAKI----RIVHHKRYLVGVIIDEGLLSPXDSVIVYHGLLEEL 115
           + S+G     V+ D  + A +    R+V  KRY+ G ++ E   S   ++  +  LLEEL
Sbjct: 164 ASSSGGRRAIVIKDYLSTASLNMITRMVMGKRYVQGEVVHEEPGSARTTLAQFKELLEEL 223

Query: 114 F 112
           F
Sbjct: 224 F 224


>07_03_0583 -
           19684388-19684498,19685083-19685216,19685765-19685888,
           19685982-19686251,19686961-19687155,19687236-19687328,
           19687411-19687539,19687646-19689277
          Length = 895

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 228 AKIRIVHHKRYLVGVIIDEGLLSPXDSVIVYHGLLEELFQSWE 100
           A +R + H R   G + +   +SP     VY  +L  +F+SW+
Sbjct: 615 AILRSLWHIRRFCGDLWEIPCISPDVKARVYRAILLRIFRSWD 657


>07_03_0487 -
           18663890-18663964,18664286-18664441,18664693-18665295,
           18665566-18665894,18665992-18666504,18667128-18667242,
           18667326-18667397,18667480-18667644,18668604-18668752,
           18668830-18668899,18668975-18669121,18669199-18669267,
           18669366-18669416,18669537-18669629,18670122-18670211
          Length = 898

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 46  FGLTLLYSQLAYGLDFSNFPTLEEFLKEPMVNDD 147
           FG  L  +  AYG D S    LEE + +P + DD
Sbjct: 842 FGAVLETAAQAYGEDESIEDMLEELVSDPELTDD 875


>05_03_0263 + 11234850-11235044,11235413-11237341
          Length = 707

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 249 LADDXAAAKIRIVHHKRYLVGVIIDEGL 166
           L D+      R++HH    VG+++D GL
Sbjct: 499 LGDEYQHINQRVLHHAPCSVGILVDRGL 526


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,438,863
Number of Sequences: 37544
Number of extensions: 190442
Number of successful extensions: 373
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)