Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30875.Seq
(449 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33589| Best HMM Match : Trypsin (HMM E-Value=0) 45 3e-05
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 39 0.002
SB_21521| Best HMM Match : Trypsin (HMM E-Value=1.7e-23) 38 0.005
SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_55505| Best HMM Match : Trypsin (HMM E-Value=0) 36 0.012
SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.020
SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.027
SB_9601| Best HMM Match : Trypsin (HMM E-Value=0) 35 0.027
SB_50961| Best HMM Match : Trypsin (HMM E-Value=0) 35 0.036
SB_25649| Best HMM Match : Trypsin (HMM E-Value=0) 34 0.047
SB_10167| Best HMM Match : Trypsin (HMM E-Value=0) 34 0.047
SB_46573| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_11235| Best HMM Match : Trypsin (HMM E-Value=1.1e-08) 32 0.25
SB_17112| Best HMM Match : Trypsin (HMM E-Value=0) 31 0.33
SB_10327| Best HMM Match : Trypsin (HMM E-Value=0) 31 0.33
SB_45862| Best HMM Match : GMP_synt_C (HMM E-Value=0) 31 0.33
SB_28897| Best HMM Match : Trypsin (HMM E-Value=0) 31 0.33
SB_26443| Best HMM Match : Trypsin (HMM E-Value=3e-22) 31 0.58
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_17890| Best HMM Match : Trypsin (HMM E-Value=3.2) 30 0.77
SB_36638| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_31846| Best HMM Match : Trypsin (HMM E-Value=0) 28 4.1
SB_48467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-21) 28 4.1
SB_37284| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
>SB_33589| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 289
Score = 44.8 bits (101), Expect = 3e-05
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIISEN 252
RIVGG EA +P QV+ ++N T FCGGS+++EN
Sbjct: 53 RIVGGVEAAPGAWPWQVALLMNGTQFCGGSLVNEN 87
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/35 (54%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNT-YFCGGSIISE 249
RIVGG+EA + +P QV VVN T + CGGS+I +
Sbjct: 249 RIVGGREASPNSWPWQVDLVVNGTRHNCGGSLIDK 283
>SB_21521| Best HMM Match : Trypsin (HMM E-Value=1.7e-23)
Length = 299
Score = 37.5 bits (83), Expect = 0.005
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIIS 246
RIVGG EA +P QVS + ++ CGGS++S
Sbjct: 30 RIVGGDEAVPHSWPWQVSIRLKGSHICGGSLLS 62
>SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 620
Score = 37.5 bits (83), Expect = 0.005
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 136 VNDDRIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIISEN-XYXLQXIALRTSTPRQWX*X 312
+ R++GG++A +P Q++ + CGGS++S R+S P Q+
Sbjct: 472 ITQSRVIGGKDAIPGAWPWQIALKSRGNFICGGSLVSSTWVVTAAHCVARSSNPAQYQII 531
Query: 313 VXVH 324
V H
Sbjct: 532 VGEH 535
>SB_55505| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 292
Score = 36.3 bits (80), Expect = 0.012
Identities = 13/35 (37%), Positives = 25/35 (71%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIISEN 252
RI+GGQ + I+ +P V+ ++++ CGGS++ E+
Sbjct: 40 RIMGGQRSTIEQHPWMVAMMLDSAQACGGSLVPED 74
>SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 35.5 bits (78), Expect = 0.020
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIIS 246
R++GG++A +P Q+S V + CGG++IS
Sbjct: 435 RVIGGEDAAPHSWPWQISLRVRGKHMCGGTLIS 467
>SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 898
Score = 35.1 bits (77), Expect = 0.027
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIISENXYXLQXIAL-RTSTPRQWX*XVXVH 324
R+V G A +P Q+S VN + CGGS+I+++ + R TP + V H
Sbjct: 31 RVVNGDNAQQHSWPWQISLRVNGRHICGGSLIAKDWVVTAAHCVDRNPTPSGYTVVVGAH 90
>SB_9601| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 285
Score = 35.1 bits (77), Expect = 0.027
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIISE 249
R+VGG EA +P Q++ + +CGG+++ E
Sbjct: 28 RVVGGDEAKAGQFPWQIALLFKRQQYCGGALVHE 61
>SB_50961| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 1007
Score = 34.7 bits (76), Expect = 0.036
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFV--VNNTYFCGGSIIS 246
RIVGGQ A ++D+P Q +++T CGGS+I+
Sbjct: 432 RIVGGQTAKVEDWPWQAGLKKGLDDTIVCGGSLIN 466
>SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 718
Score = 34.3 bits (75), Expect = 0.047
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Frame = +1
Query: 142 DDRIVGGQEAFIDDYPHQVSFVVN----NTYFCGGSII 243
+ RIVGG+EA + +P QV ++ T++CGGS+I
Sbjct: 243 ESRIVGGREAPRNSWPWQVEIILKTPNLTTHYCGGSLI 280
>SB_10167| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 532
Score = 34.3 bits (75), Expect = 0.047
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIIS 246
R+V G A +P Q+S VN + CGGS+I+
Sbjct: 80 RVVNGDNAAQHSWPWQISLRVNGRHICGGSLIT 112
>SB_46573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 32.7 bits (71), Expect = 0.14
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFV--VNNTYFCGGSII 243
RIVGG EA I+ +P Q + N FCGGS+I
Sbjct: 29 RIVGGTEAPINGWPWQAMLLRSPNGDQFCGGSLI 62
>SB_11235| Best HMM Match : Trypsin (HMM E-Value=1.1e-08)
Length = 235
Score = 31.9 bits (69), Expect = 0.25
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIIS 246
RI+ G+EA + +P Q+S V ++ CG S++S
Sbjct: 85 RIINGEEAVPNSWPWQLSLRVYGSHNCGASLLS 117
>SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 636
Score = 31.5 bits (68), Expect = 0.33
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIIS 246
RI+ G +A + +P V NN + CGG+++S
Sbjct: 351 RIISGSDAQPNSWPWMVQINYNNGHHCGGTLVS 383
>SB_10327| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 865
Score = 31.5 bits (68), Expect = 0.33
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIIS 246
RIV G++A +P Q+SF ++ CG S+++
Sbjct: 240 RIVNGEDAVPHSWPWQLSFRYKGSHICGASLLT 272
>SB_45862| Best HMM Match : GMP_synt_C (HMM E-Value=0)
Length = 687
Score = 31.5 bits (68), Expect = 0.33
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIIS 246
R++GG+ A +P QVS + + CGG++IS
Sbjct: 476 RVIGGEAARPYSWPWQVSVSMGKLHSCGGALIS 508
>SB_28897| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 974
Score = 31.5 bits (68), Expect = 0.33
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIISEN 252
RIVGG+EA +P + V ++ CGG++I+ +
Sbjct: 723 RIVGGREAKAGAWPWLAAIYVKGSFRCGGALIARD 757
>SB_26443| Best HMM Match : Trypsin (HMM E-Value=3e-22)
Length = 231
Score = 30.7 bits (66), Expect = 0.58
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIIS 246
R+V G A +P Q+S N + CGGS+I+
Sbjct: 37 RVVNGANAPQHAWPWQISLRTNGQHICGGSLIT 69
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 30.7 bits (66), Expect = 0.58
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 6/41 (14%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVS-----FVVN-NTYFCGGSIISEN 252
RI GG ++ YP QV+ F N NT+ CGG++I+E+
Sbjct: 1160 RIYGGSDSIPGGYPWQVALEFDTFQSNYNTFHCGGTLIAED 1200
>SB_17890| Best HMM Match : Trypsin (HMM E-Value=3.2)
Length = 157
Score = 30.3 bits (65), Expect = 0.77
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 142 DDRIVGGQEAFIDDYPHQVSFVVNNTYFCGGSII 243
D RIVGG + +P QV+ ++N+ C GS+I
Sbjct: 51 DKRIVGGVVSSEGLWPWQVALLLNDRQVCAGSLI 84
>SB_36638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIISE 249
RIVGG + YP V CGGS+ISE
Sbjct: 107 RIVGGHDTVKGAYPWHVLIRKGGHVACGGSLISE 140
>SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNN-TYFCGGSIIS 246
RIVGG A +P QV + N+ FCGG++++
Sbjct: 630 RIVGGSTAPPGAWPWQVMLIYNSGRQFCGGTLVT 663
>SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 786
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Frame = +1
Query: 151 IVGGQEAFIDDYPHQVSFVVNNT---YFCGGSIIS 246
I+GG A ++P QVS +N++ + CGG++IS
Sbjct: 546 IMGGANAEHGEWPWQVSMKLNSSSLPHICGGNVIS 580
>SB_31846| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 454
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFV----VNNTYFCGGSIISEN 252
RIVGG +A ++P Q + + FCGG+++ E+
Sbjct: 210 RIVGGNDAMHGEWPWQAMLMFQTPLGYKQFCGGALVHED 248
>SB_48467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-21)
Length = 418
Score = 27.9 bits (59), Expect = 4.1
Identities = 11/33 (33%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +1
Query: 151 IVGGQEAFIDDYPHQVS-FVVNNTYFCGGSIIS 246
I+GG +A + ++P QVS ++ + CGG++++
Sbjct: 258 IIGGTDAAVGEWPWQVSLYLTHYGPVCGGTLLT 290
>SB_37284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1031
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 142 DDRIVGGQEAFIDDYPHQVSF-VVNNTYFCGGSII 243
+ RIVGG A +P Q N +FCGG+++
Sbjct: 246 NSRIVGGTTAQRGAWPWQAMLRYYNGNHFCGGTLV 280
>SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 161 PPTILSSFTMGSLRNSSKVGKLEKSRPYASCEY 63
PP + S T+ L ++S +GKL P S E+
Sbjct: 418 PPPVPESKTLAKLLDASDIGKLHTLEPEQSIEF 450
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,625,520
Number of Sequences: 59808
Number of extensions: 196684
Number of successful extensions: 396
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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