Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30871.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1314 - 25721137-25721538                                         49   2e-06
10_01_0053 - 767131-767962,768517-769037,769384-769601,769720-76...    29   2.1  
09_04_0683 - 19431034-19431495,19431632-19431997,19432055-194323...    29   2.7  
05_01_0274 - 2119122-2119775,2121457-2121570,2121895-2122203,212...    28   3.6  
09_04_0564 + 18565583-18566449,18569662-18570123                       28   4.8  
11_01_0185 + 1455635-1455817,1455997-1456051,1456415-1456611,145...    27   6.3  
06_03_0138 + 17093196-17093325,17095704-17095804,17096224-170962...    27   6.3  
01_05_0005 - 16886553-16886946,16887079-16887404                       27   6.3  

>07_03_1314 - 25721137-25721538
          Length = 133

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 20/53 (37%), Positives = 31/53 (58%)
 Frame = +2

Query: 254 LTGYPLAINATDIKVKEVDFNPEFISRVIPKLDWEVLWVAADSIGHSDGLPRS 412
           +TGYPL +       KE + NPEF+  ++PK+DW  L  A  ++G  + LP +
Sbjct: 17  VTGYPLKLQVVKWSTKEAEPNPEFLRGMLPKIDWPALVAATQALGLPELLPEA 69


>10_01_0053 -
           767131-767962,768517-769037,769384-769601,769720-769825,
           769958-770017
          Length = 578

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -1

Query: 325 KFRIKIDFFNFNVCRVNCKRIASQTPFKHFEVSILWVISFIIIFVLCNF 179
           + R K  FFN+    +N   + + T     + ++ W ISF+I+ V+  F
Sbjct: 190 ELRRKGSFFNWYTFMINSGSLLASTVLVWLQDNVGWGISFVIVVVVMAF 238


>09_04_0683 -
           19431034-19431495,19431632-19431997,19432055-19432326,
           19433621-19433686,19433924-19433978,19434509-19434577,
           19435200-19435307,19435394-19435462,19435883-19436038,
           19436089-19436229,19436514-19436568,19437103-19437233,
           19437382-19437486
          Length = 684

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 353 WEVLWVAADSIGHSDGLP 406
           W++ WVA  +IGHS+ LP
Sbjct: 576 WQLWWVALRAIGHSECLP 593


>05_01_0274 -
           2119122-2119775,2121457-2121570,2121895-2122203,
           2123743-2123904,2124046-2124129,2124315-2124500
          Length = 502

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -3

Query: 497 SVPLQLPPLTRLYELSSKTLRFHHTYFLKIL--ADHHCGRCYQRPPIILPNPALVL 336
           ++ L  PP T     ++  L+ H  Y    L  + +  G    RPP++LP P+ V+
Sbjct: 373 TLDLTQPPPTTTTTAAAAMLQLHRPYAFSSLPFSMYGAGGGSHRPPVVLPPPSSVV 428


>09_04_0564 + 18565583-18566449,18569662-18570123
          Length = 442

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 422 YFLKILADHHCGRCYQRPPIILPNPA 345
           Y+   L +HH   C+  PP   P+PA
Sbjct: 5   YYASFLKNHHRRYCFSTPPSPSPSPA 30


>11_01_0185 +
           1455635-1455817,1455997-1456051,1456415-1456611,
           1456850-1457206,1457355-1457424,1457527-1457672,
           1457786-1457831,1457910-1457962,1458507-1458651,
           1459268-1459386,1459494-1459565,1459872-1459975,
           1460117-1460173,1460260-1460452,1460535-1460678,
           1460825-1460927,1461444-1461592,1462674-1462728,
           1464037-1464227,1464580-1464701,1464831-1464978,
           1465354-1465423,1465499-1465644,1466097-1466247,
           1466614-1466732,1466807-1466848,1466849-1466961,
           1467496-1467552,1467642-1467834,1468040-1468183,
           1468567-1468665
          Length = 1280

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 378 SAATHNTSQSSFGITRLINSGLKSTSLTLMSVALIAR 268
           SA T   S++SF   ++IN G    SLT+ +  L AR
Sbjct: 584 SAITWQDSENSFLRVKIINFGSDPVSLTISATGLQAR 620


>06_03_0138 +
           17093196-17093325,17095704-17095804,17096224-17096292,
           17096403-17097650,17097763-17097871,17099459-17099655,
           17099732-17099842,17099927-17100079
          Length = 705

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 22/52 (42%), Positives = 29/52 (55%)
 Frame = -2

Query: 441 SSFSSYLFSKDLGRPSLWPMLSAATHNTSQSSFGITRLINSGLKSTSLTLMS 286
           SS S+ +FS  L  PS+ P +S      SQS  GI+ L+N+  K  SL L S
Sbjct: 314 SSVSASVFSLGLTPPSVNPPVSTIESTMSQSQ-GISPLMNN--KPVSLPLDS 362


>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 470 TRLYELSSKTLRFHHTYFLKILADHHCGRCYQRPPIIL 357
           +R+YE S K +  H  Y   + AD++    Y   P+++
Sbjct: 152 SRIYEQSGKPISRHKGYLAMVFADYNLSVEYYHAPMLV 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,581,725
Number of Sequences: 37544
Number of extensions: 215778
Number of successful extensions: 506
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)