Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30871.Seq
(499 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 24 1.0
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 23 2.3
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 22 4.1
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 22 4.1
EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor 1-a... 22 4.1
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 21 5.4
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 21 5.4
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 21 5.4
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 21 5.4
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 21 5.4
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 21 7.1
DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex det... 21 7.1
AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein. 21 7.1
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 21 7.1
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 21 7.1
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 23.8 bits (49), Expect = 1.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -1
Query: 271 KRIASQTPFKHFEVSILWVISFIIIF 194
K ++ ++HF I W+ FI+IF
Sbjct: 393 KSRTKESAWRHFAAIIEWLSFFIVIF 418
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 22.6 bits (46), Expect = 2.3
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Frame = +2
Query: 197 YNNETNYPQYAHFEMLERCLTGYPLAINATDIKVKEVDFNPEFISRVIPKLDW---EVLW 367
Y+N +PQ F L Y INA ++++ + + I K+D E L
Sbjct: 303 YSNGVTFPQRNRFSSLPYYKYKYLNVINALEMRLMDAIDSGYLIDEYGKKIDIYTPEGLN 362
Query: 368 VAADSI-GHSDGLPRSLENKYD 430
+ + I G+SD + YD
Sbjct: 363 MLGNVIEGNSDSINTKFYGMYD 384
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 230 HFEMLERCLTGYPLAINATDIKVKEV 307
H E L L G + N +I VKE+
Sbjct: 295 HHEALTEALPGDNVGFNVKNISVKEL 320
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 21.8 bits (44), Expect = 4.1
Identities = 13/52 (25%), Positives = 22/52 (42%)
Frame = +2
Query: 197 YNNETNYPQYAHFEMLERCLTGYPLAINATDIKVKEVDFNPEFISRVIPKLD 352
Y+N +PQ F L Y INA ++++ + + I K+D
Sbjct: 303 YSNGVTFPQRNRFSSLPYYKYKYLNVINALEMRLMDAIDSGYLIDEYGKKID 354
>EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor
1-alpha protein.
Length = 119
Score = 21.8 bits (44), Expect = 4.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 230 HFEMLERCLTGYPLAINATDIKVKEV 307
H E L L G + N +I VKE+
Sbjct: 6 HHEALTEALPGDNVGFNVKNISVKEL 31
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.4 bits (43), Expect = 5.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +2
Query: 50 SNYARKVHNNKYVLRKFYKKV 112
+NY K +NN Y +K Y +
Sbjct: 307 NNYNYKNYNNNYNSKKLYYNI 327
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 5.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +2
Query: 50 SNYARKVHNNKYVLRKFYKKV 112
+NY K +NN Y +K Y +
Sbjct: 318 NNYNYKNYNNNYNSKKLYYNI 338
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 21.4 bits (43), Expect = 5.4
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +2
Query: 230 HFEMLERCLTGYPLAINATDIKVKEV 307
H E L+ + G + N ++ VKE+
Sbjct: 238 HHEALQEAVPGDNVGFNVKNVSVKEL 263
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 21.4 bits (43), Expect = 5.4
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = -1
Query: 232 VSILWVISFIIIF 194
V+ +W++SF+I F
Sbjct: 186 VATVWILSFVICF 198
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 5.4
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +2
Query: 230 HFEMLERCLTGYPLAINATDIKVKEV 307
H E L+ + G + N ++ VKE+
Sbjct: 295 HHEALQEAVPGDNVGFNVKNVSVKEL 320
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 21.0 bits (42), Expect = 7.1
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -3
Query: 92 LKHICYYVLYV 60
L +ICY+V+YV
Sbjct: 482 LLNICYWVIYV 492
>DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex
determiner protein.
Length = 178
Score = 21.0 bits (42), Expect = 7.1
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +2
Query: 191 YKYNNETNYPQY 226
YKY+N NY Y
Sbjct: 89 YKYSNYNNYNNY 100
>AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein.
Length = 349
Score = 21.0 bits (42), Expect = 7.1
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = -1
Query: 361 YFPIQLWYYTTNKFRIKID 305
Y+ + LWY+ KID
Sbjct: 276 YYVMSLWYWIDRNSAYKID 294
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 21.0 bits (42), Expect = 7.1
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +2
Query: 191 YKYNNETNYPQY 226
YKY+N NY Y
Sbjct: 322 YKYSNYNNYNNY 333
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 21.0 bits (42), Expect = 7.1
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -2
Query: 387 PMLSAATHNTSQSSFGITRLINSGLKSTSLTLMSV 283
P LS + R +NS +KST +LM +
Sbjct: 712 PPLSMLQRMAEFTKLDTNRQVNSAVKSTIQSLMKL 746
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,521
Number of Sequences: 438
Number of extensions: 3203
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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