Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30869.Seq
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch...   106   2e-24
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...   106   2e-24
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    29   0.53 
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    27   2.2  
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.6  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    25   6.6  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    25   6.6  
SPCC191.05c |||nucleoside 2-deoxyribosyltransferase |Schizosacch...    25   8.7  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    25   8.7  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    25   8.7  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   8.7  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   8.7  

>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 160

 Score =  106 bits (255), Expect = 2e-24
 Identities = 52/80 (65%), Positives = 59/80 (73%)
 Frame = +3

Query: 15  MTNSKGYRRGTRDLFARRFRTYGTIPLSTYMKVYKVGDIVDIXGNGAVQKGMPHKVYHGK 194
           M +S G R  TR  F R FR +G I LSTY+K YKVGDIVDI  NGAVQKGMPHK YHGK
Sbjct: 1   MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60

Query: 195 TGRVYNVTAHALGVIVNKRV 254
           TG VYNVT  ++GV++ K V
Sbjct: 61  TGVVYNVTQSSVGVLIYKVV 80



 Score =  100 bits (240), Expect = 1e-22
 Identities = 47/76 (61%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
 Frame = +2

Query: 260 RIIPKRINIRVEHVKHSKCRQDFLKRVKENXRLLKEAKAAGKTVNLKRQPAPPKAAHIVS 439
           R + KR+N+R+EHVKHSKCRQDFL RVK N    KEAKA GKTV L+RQPAPP  AH VS
Sbjct: 83  RYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPATAHFVS 142

Query: 440 -GTEKPXLLAPIPYDS 484
               +P  L P+ YD+
Sbjct: 143 TENNEPVTLHPVAYDT 158


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score =  106 bits (255), Expect = 2e-24
 Identities = 52/80 (65%), Positives = 59/80 (73%)
 Frame = +3

Query: 15  MTNSKGYRRGTRDLFARRFRTYGTIPLSTYMKVYKVGDIVDIXGNGAVQKGMPHKVYHGK 194
           M +S G R  TR  F R FR +G I LSTY+K YKVGDIVDI  NGAVQKGMPHK YHGK
Sbjct: 1   MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60

Query: 195 TGRVYNVTAHALGVIVNKRV 254
           TG VYNVT  ++GV++ K V
Sbjct: 61  TGVVYNVTQSSVGVLIYKVV 80



 Score =  100 bits (239), Expect = 1e-22
 Identities = 47/76 (61%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
 Frame = +2

Query: 260 RIIPKRINIRVEHVKHSKCRQDFLKRVKENXRLLKEAKAAGKTVNLKRQPAPPKAAHIVS 439
           R + KR+N+R+EHVKHSKCRQDFL RVK N    KEAKA GKTV L+RQPAPP  AH VS
Sbjct: 83  RYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPAKAHFVS 142

Query: 440 -GTEKPXLLAPIPYDS 484
               +P  L P+ YD+
Sbjct: 143 TENNEPVTLHPVAYDT 158


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
 Frame = -1

Query: 454 GFLSSTDDVGSFRGSWLSLQVDGLAGSL-GFLQ*PL----ILFDSLKEVLSALGVLDMLN 290
           GF S+T    SF+G W+ L +  + G L G LQ  +     +++SL EV  ++ +   L+
Sbjct: 445 GFASATILPMSFQGGWIDLPIAFILGCLVGILQHYIAPRSTMYNSLFEVTGSI-ITSFLS 503

Query: 289 TDIDALRYN 263
               ++RY+
Sbjct: 504 RAFGSIRYS 512


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +2

Query: 86  YSALHVHESVQSWRHCRHXRQWCSSKGYATQSIPW 190
           +  L  H    SW   +  R+ C +KGY     PW
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 365 EAKAAGKTVNLKRQPAPPKAAHIVSGT 445
           + KA  K  +  +QP+PP A H  + T
Sbjct: 344 DTKAGEKLTDSSKQPSPPVAEHFSNET 370


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 263 IIPKRINIRVEHVKHSKCRQDFLKRVKENXRLLKEAKAAGK 385
           I+ K +NI++EH+  S   Q  L   +E+     EA   GK
Sbjct: 808 ILGKSVNIKLEHISDS--MQSVLDNYRESISKQNEAIEMGK 846


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +3

Query: 273 SASISVLSMSSTPSADKTSLRESKRXRGY*RKPRLPARPST*RDSQLPLKLPTSSVELRN 452
           SAS S  S++S+ S D  ++   +R R   RKP +  +P+  +  + P  + T   +   
Sbjct: 56  SASRSPESIASSQSNDSAAIPSYRRKRRKVRKPEI-VKPTLRKRGRKPKNISTLEHDKSK 114

Query: 453 P 455
           P
Sbjct: 115 P 115


>SPCC191.05c |||nucleoside 2-deoxyribosyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 211

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 385 LAGSLGFLQ*PLILFDSLKEVLSALGV 305
           LAG L F    + LFD LKE+    GV
Sbjct: 22  LAGDLVFRPNAIELFDELKEICKDAGV 48


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 17/51 (33%), Positives = 21/51 (41%)
 Frame = +2

Query: 254 CGRIIPKRINIRVEHVKHSKCRQDFLKRVKENXRLLKEAKAAGKTVNLKRQ 406
           C  + P    I     +  K   DF KR  E  R+ +E   A KTV L  Q
Sbjct: 162 CSLVHPNDPAILALSKELQKKSDDFEKRESEKKRVAQEKVIAAKTVLLALQ 212


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +3

Query: 294 SMSSTPSADKTSLRE 338
           SMSS+P+A +TSLR+
Sbjct: 163 SMSSSPTASRTSLRK 177


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -1

Query: 409  WLSLQVDGLAGSLGF 365
            WL+++ DG++G +GF
Sbjct: 1085 WLAIRTDGISGLVGF 1099


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 302 KHSKCRQDFLKRVKENXRLLKEAKAAGKT 388
           K++KC   F ++V+E   +L E    G+T
Sbjct: 17  KNTKCPDKFEQKVEEYLEVLNELHLTGRT 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,956,536
Number of Sequences: 5004
Number of extensions: 37721
Number of successful extensions: 137
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)