Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30869.Seq
(511 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0290 + 2246791-2247027,2248089-2248346 113 1e-25
10_08_0310 - 16669565-16669822,16670558-16670794 110 7e-25
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612... 29 1.6
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 29 1.6
06_03_1007 + 26869731-26870429,26871262-26871387 29 2.2
08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715,230... 29 2.9
05_03_0549 - 15349259-15349346,15349466-15349585,15349899-153500... 28 5.0
01_06_1794 - 39919363-39920025 28 5.0
02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599 27 6.6
01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,356... 27 6.6
06_01_0102 + 834660-834911,835460-835568,835891-836006,836116-83... 27 8.8
06_01_0056 - 478424-478491,478587-478821,478916-478978,479102-47... 27 8.8
02_05_0157 - 26353971-26354336,26354645-26354726,26354838-263549... 27 8.8
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 113 bits (271), Expect = 1e-25
Identities = 55/111 (49%), Positives = 72/111 (64%), Gaps = 1/111 (0%)
Frame = +3
Query: 15 MTNSKGYRRGTRDLFARRFRTYGTIPLSTYMKVYKVGDIVDIXGNGAVQKGMPHKVYHGK 194
M G R TRDLFAR FR G IPL+TY++ YK+GD VD+ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
Query: 195 TGRVYNVTAHALGVIVNKRVAEGLYRS-ASISVLSMSSTPSADKTSLRESK 344
TGRV+NVT A+GV +NK+V + R + V + + ++ LR+ K
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIK 111
Score = 66.9 bits (156), Expect = 9e-12
Identities = 33/74 (44%), Positives = 47/74 (63%)
Frame = +2
Query: 260 RIIPKRINIRVEHVKHSKCRQDFLKRVKENXRLLKEAKAAGKTVNLKRQPAPPKAAHIVS 439
RII KRI++RVEHV+ S+C ++ R +N +L +AKA G+ ++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAKARGEVISTKRQPEGPKPGFMVE 142
Query: 440 GTEKPXLLAPIPYD 481
G + PIPYD
Sbjct: 143 GATL-ETVTPIPYD 155
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 110 bits (264), Expect = 7e-25
Identities = 50/86 (58%), Positives = 62/86 (72%)
Frame = +3
Query: 15 MTNSKGYRRGTRDLFARRFRTYGTIPLSTYMKVYKVGDIVDIXGNGAVQKGMPHKVYHGK 194
M G R TRDLFAR FR G IPL+TY++ YK+G+ VD+ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGR 60
Query: 195 TGRVYNVTAHALGVIVNKRVAEGLYR 272
TGRV+NVT A+GV +NK+V + R
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIR 86
Score = 69.3 bits (162), Expect = 2e-12
Identities = 34/74 (45%), Positives = 48/74 (64%)
Frame = +2
Query: 260 RIIPKRINIRVEHVKHSKCRQDFLKRVKENXRLLKEAKAAGKTVNLKRQPAPPKAAHIVS 439
RII KRI++RVEHV+ S+C ++F R +N +L +AKA G+ ++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAKARGEVISTKRQPQGPKPGFMVE 142
Query: 440 GTEKPXLLAPIPYD 481
G + PIPYD
Sbjct: 143 GATL-ETVTPIPYD 155
>03_05_0435 -
24259864-24260206,24260302-24260467,24261175-24261241,
24261553-24261648,24261718-24261898,24262252-24262323,
24262393-24262505,24262596-24262817,24263262-24263910,
24264118-24264206,24265932-24266015,24266219-24266358,
24266522-24266573
Length = 757
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +2
Query: 155 SSKGYATQSIPWKDRSRVQRDC--SCSRCDCQQACCGRIIPKRINIRVEHVKHSKCRQDF 328
+S G + Q P + R + Q D SC RC C+++ C ++ + +V + CR F
Sbjct: 436 TSAGNSGQENPKRKRQKCQNDNVDSCKRCSCKKSKCLKLYCECFASKVYCSESCSCRGCF 495
>01_01_0167 +
1422344-1424260,1424338-1424472,1424568-1424990,
1425183-1425252,1425356-1425495,1425620-1425679,
1425776-1425931,1426272-1426541
Length = 1056
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 114 YKVGDIVDIXGNGAVQKGMPHKVY 185
++ GDI+ I G+G+V K PH++Y
Sbjct: 623 FEDGDIIVIWGDGSVSKVGPHEIY 646
>06_03_1007 + 26869731-26870429,26871262-26871387
Length = 274
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +3
Query: 234 VIVNKRVAEGLYRSASISVLSMSSTPSADKTSLRESKRXRGY*RKPRLPARP 389
V+V EG Y S + + S S +AD + RG R+PR ARP
Sbjct: 55 VVVEVEEEEG-YESGASAASSTSCVSTADSDVAASAAARRGRRRRPRAAARP 105
>08_01_0283 -
2304024-2304111,2304224-2304343,2304594-2304715,
2304824-2305096,2305454-2305558,2305635-2305851,
2306012-2306262,2306518-2306724,2307087-2307351,
2308655-2308749
Length = 580
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 122 WRHCRHXRQWCSSKGYATQSIPWKDRSRVQRDCS 223
W H QW YAT+ I W+ R+ V D S
Sbjct: 535 WISIGHSTQWLWYSVYATKQISWRTRALVISDWS 568
>05_03_0549 -
15349259-15349346,15349466-15349585,15349899-15350020,
15350511-15350783,15351398-15351502,15351588-15351804,
15352031-15352281,15352582-15352776,15352881-15353139,
15354617-15354714
Length = 575
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +2
Query: 122 WRHCRHXRQWCSSKGYATQSIPWKDRSRVQRD 217
W H H QW YA++ W+ R V D
Sbjct: 530 WIHVGHSTQWLWYSVYASKQFSWRTRMLVVSD 561
>01_06_1794 - 39919363-39920025
Length = 220
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 365 EAKAAGKTVNLKRQPAPPKAAHIVSG 442
EA AAG + KRQP PP SG
Sbjct: 37 EAAAAGDKTSAKRQPPPPSRLKKTSG 62
>02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599
Length = 99
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 299 VKHSKCRQDFLKRVKENXRLLKEAKAAGKTVNLKRQ 406
++ +KCRQD++ VK++ +L+++ A K KRQ
Sbjct: 1 MRQAKCRQDYMAIVKQSRQLIEKLDA--KNEPKKRQ 34
>01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,
3560853-3561491,3562154-3562450,3562553-3563407,
3564363-3564545,3565041-3565118,3565762-3565974,
3566075-3566238,3566357-3566445,3566761-3566891,
3566980-3567148,3567255-3567327,3567525-3567606,
3567677-3567808,3568743-3568818,3568965-3569065,
3569446-3569636,3569738-3569912,3570604-3570854,
3571327-3571603,3572184-3572267,3572496-3573206
Length = 1867
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = -1
Query: 337 SLKEVLSALGVLDMLNTDIDAL--RYNPSATRLLTI 236
+L VL+ +++LN D+DAL RY AT LL++
Sbjct: 1218 ALPSVLAFCQKVELLNDDLDALFNRYTSLATNLLSL 1253
>06_01_0102 +
834660-834911,835460-835568,835891-836006,836116-836235,
836398-836436,836678-836811,837035-837299,837615-837698,
837943-838003,838748-838810,839174-839216,839632-839711,
839831-840267
Length = 600
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 234 VIVNKRVAEGLYRSASISVLSMSSTPSADKTSLRESKR 347
++V KRV E ++S+S S+ S +TP +S+ S +
Sbjct: 268 LMVLKRVLEKHFKSSSFSIGSSGATPQVSDSSVPSSMK 305
>06_01_0056 -
478424-478491,478587-478821,478916-478978,479102-479179,
479263-479354,479788-479866,479971-480104,480184-480523
Length = 362
Score = 27.1 bits (57), Expect = 8.8
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 69 FRTYGTIPLSTYMKVYKVGDIVDIXGNGAVQKGMPHKVYHGKTGRVYNVTAHALG 233
F T G IP Y+ G + + +G + G PHK+ R+Y++ + ALG
Sbjct: 110 FSTEGEIP-------YREGQSIGVIADGVDKNGKPHKL------RLYSIASSALG 151
>02_05_0157 -
26353971-26354336,26354645-26354726,26354838-26354933,
26355365-26356068
Length = 415
Score = 27.1 bits (57), Expect = 8.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 116 QSWRHCRHXRQWCSSKG 166
QSW +C +WC +KG
Sbjct: 255 QSWGNCVSVEEWCKNKG 271
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,678,090
Number of Sequences: 37544
Number of extensions: 276704
Number of successful extensions: 925
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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