Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30869.Seq
(511 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0) 133 7e-32
SB_34345| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.42
SB_58538| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.96
SB_55854| Best HMM Match : NinE (HMM E-Value=2.1) 29 2.2
SB_24684| Best HMM Match : Phage_rep_O (HMM E-Value=2.3) 29 2.2
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07) 28 5.1
SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71) 28 5.1
SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23) 27 6.8
SB_8760| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08) 27 6.8
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 27 9.0
SB_36345| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11) 27 9.0
>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 768
Score = 133 bits (322), Expect = 7e-32
Identities = 60/80 (75%), Positives = 69/80 (86%)
Frame = +3
Query: 15 MTNSKGYRRGTRDLFARRFRTYGTIPLSTYMKVYKVGDIVDIXGNGAVQKGMPHKVYHGK 194
MTN+KGYRRGTR +F+++FR G LSTY+K YKVGDIVD+ NGAVQKGMPHKVYHGK
Sbjct: 423 MTNTKGYRRGTRYMFSKKFRHRGVEHLSTYLKCYKVGDIVDVKANGAVQKGMPHKVYHGK 482
Query: 195 TGRVYNVTAHALGVIVNKRV 254
TGRVYNVT ALGV+VNK+V
Sbjct: 483 TGRVYNVTKRALGVVVNKQV 502
>SB_34345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 481
Score = 31.5 bits (68), Expect = 0.42
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = +3
Query: 72 RTYGTIPLSTYMKVYKVGDIVDIXGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVN-- 245
+ Y T P+S +++ Y G ++D+ G KG K G V ++ H G+ +
Sbjct: 58 KQYNTFPVSKFIRQYPTG-VIDLKHYGVGDKGALALATVLKQGEVSSLCLHDNGIGIEGL 116
Query: 246 KRVAEGLYRSASISVLSMSSTPSADKTSL 332
+ ++ L +A I L +S P +K+S+
Sbjct: 117 RCLSTMLTTNACIKSLDLSGNP-VNKSSI 144
>SB_58538| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 30.3 bits (65), Expect = 0.96
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 180 VYHGKTGRVYNVTAHALGV-IVNKRVAEGLYRSASISVLSMSSTPSAD 320
V HGK + VTAHA + ++AEG RS I ++++ SAD
Sbjct: 28 VIHGKRSHL-GVTAHASEYQLTQNKIAEGRQRSRRIDYKALNNVSSAD 74
>SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)
Length = 271
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 272 KRINIRVEH-VKHSKCRQDFLKRVKENXRLLKEAKAAGKT 388
+RI ++H ++ K +QDF+ +KE RL +E+++ T
Sbjct: 39 ERIQSCIDHKLEERKIKQDFVTLIKERNRLGRESRSGAST 78
>SB_24684| Best HMM Match : Phage_rep_O (HMM E-Value=2.3)
Length = 218
Score = 29.1 bits (62), Expect = 2.2
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = +2
Query: 83 NYSALHVHESVQSWRHCRHXRQWCSSKGYATQSIP--WKDRS-RVQRDCSCSRCDCQQAC 253
N A+ + ESV+SWR R++ + + + P DRS +V RCD Q
Sbjct: 85 NPDAMLLRESVRSWRE-NIPRKYSDLRPTSLKISPSCVPDRSEKVGISFMSGRCDMQYHG 143
Query: 254 CGRIIPKRINIRVEHVKHSKCRQDFLKRVKENXRLLKE 367
R +P+ + V + S+ R+ + V R L+E
Sbjct: 144 ISRPVPESV-FEVTRIHQSRRRKRRVNHVTRAWRRLRE 180
>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
Length = 1458
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +2
Query: 272 KRINIRVEHVKHSKCRQDFLKRVKENXRLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 451
K I + EH + S C Q F + N + ++ + GKT + + K HI+S +EK
Sbjct: 413 KNIELLTEHWECSGCEQRFNRHDNYNRHVTEKRCSGGKTQLICK---GEKFKHIMSSSEK 469
>SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)
Length = 1139
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 152 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQ 247
C+S + D+S VQ+DCS R DC +
Sbjct: 736 CNSSDIGSTPTILSDKSPVQQDCSSIRRDCSR 767
>SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)
Length = 565
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 326 FLKRVKENXRLLKEAKAAGKTVNLKRQPA-PPKAAHIVSGTEKPXLLAPIP 475
F+KR + R L+E A +NL ++PA P K + EKP P P
Sbjct: 272 FVKRTQRRQRELEEVADA---INLAKRPAQPEKPLKFLVKVEKPVPRPPTP 319
>SB_8760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 874
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 2 TRLEDDELQGLPPRHQGLVRSQVPHIWNYSALHVHESV--QSWRHC 133
TR E+ EL L PR QGL + +W L +H + S R+C
Sbjct: 473 TRGEERELCLLLPRRQGLQQIPTLELWEKRNLKIHRNSLRSSARNC 518
>SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)
Length = 654
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -1
Query: 376 SLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDAL--RYNPSATRLLTITPRA*AVTLYT 203
S+ F + I D+LK L + + TD++ + +YN + + LL + T+
Sbjct: 227 SVSFRKIKSINIDTLKNDLRSSELHHSPKTDLNGIVKKYNQTLSTLLDSHAQVKIKTITN 286
Query: 202 RPVFPWY 182
RP PW+
Sbjct: 287 RPRLPWF 293
>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 294 SMSSTPSADKTSLRESKRXRGY*RKPRLPARPST*RDSQLPLKLP 428
++S+ PS KT+ ++R RKP +PAR ST ++ P
Sbjct: 633 TLSAPPSRPKTAPTSAQRTPEPIRKPLVPARMSTDSTDAFKIQAP 677
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +2
Query: 128 HC-RHXRQWCSSKGYATQSIPW--KDRSRVQRDCSCSRCDC 241
HC RH ++ + AT+ +PW KD S R C + C C
Sbjct: 1275 HCQRHYQEKTRNWFLATRHVPWCRKDGSYDPRQCYKTDCFC 1315
>SB_36345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 194 DRSRVQRDCSCSRCDCQQACCGRIIPKRINIRVEHVKHSKCRQDFLK 334
D + + DC +RC C + IPK + + H KH QD L+
Sbjct: 123 DTCKTESDCGGNRCCVLNKFCMKKIPKDMTCYLSH-KHKCGCQDGLE 168
>SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11)
Length = 403
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 212 RDCSCSRCDCQQACCGRIIPKRINIRVEHVKHSKCRQDFLKRVKENXRL 358
RDC+CS+C R+ R+ I + K ++ R+ + +R EN RL
Sbjct: 44 RDCTCSKCQLITE-RQRVTAARVAILRQQRKSAELREKY-QREMENVRL 90
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,559,543
Number of Sequences: 59808
Number of extensions: 323669
Number of successful extensions: 1001
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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