Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30869.Seq
(511 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal prote... 115 2e-26
Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical pr... 35 0.039
Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical pr... 35 0.039
Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical pr... 35 0.039
U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical pr... 29 1.5
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 29 2.0
AC006769-14|AAF60579.1| 378|Caenorhabditis elegans Hypothetical... 29 2.0
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 28 3.4
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 28 3.4
AF099920-7|AAK29842.2| 336|Caenorhabditis elegans Hypothetical ... 28 3.4
AF099920-6|AAQ01531.1| 388|Caenorhabditis elegans Hypothetical ... 28 3.4
Z78060-2|CAB01490.1| 114|Caenorhabditis elegans Hypothetical pr... 28 4.5
U97194-9|AAB52452.1| 336|Caenorhabditis elegans Hypothetical pr... 28 4.5
AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical... 28 4.5
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 23 4.9
Z92775-2|CAB07162.2| 382|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z92775-1|CAB07161.2| 379|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 27 6.0
>L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 21 protein.
Length = 161
Score = 115 bits (277), Expect = 2e-26
Identities = 54/80 (67%), Positives = 62/80 (77%)
Frame = +3
Query: 15 MTNSKGYRRGTRDLFARRFRTYGTIPLSTYMKVYKVGDIVDIXGNGAVQKGMPHKVYHGK 194
MTNSKG RRGTR +FAR FR +G LSTY YK GD+VDI NGA QKGMP K YHG+
Sbjct: 1 MTNSKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGR 60
Query: 195 TGRVYNVTAHALGVIVNKRV 254
TGR++NVT A+G+IVNKRV
Sbjct: 61 TGRIFNVTRGAVGIIVNKRV 80
Score = 84.2 bits (199), Expect = 5e-17
Identities = 41/77 (53%), Positives = 53/77 (68%), Gaps = 2/77 (2%)
Frame = +2
Query: 257 GRIIPKRINIRVEHVKHSKCRQDFLKRVKENXRLLKEAKAAGKTV-NLKRQPAPPKAAH- 430
G I+PKRINIR+EH+K SKCR DFL RVK N K AK+AG+ V LKR P P+ AH
Sbjct: 82 GNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAGQPVPALKRLPVAPRGAHT 141
Query: 431 IVSGTEKPXLLAPIPYD 481
+ + +P LLAP+ ++
Sbjct: 142 VTTQNNEPELLAPLRFE 158
>Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical
protein W06F12.2c protein.
Length = 502
Score = 34.7 bits (76), Expect = 0.039
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -1
Query: 199 PVFPWYTLCGIPF*TAPLPXMSTMSPTLYTFMYVESGIVPYVRNLR 62
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical
protein W06F12.2b protein.
Length = 568
Score = 34.7 bits (76), Expect = 0.039
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -1
Query: 199 PVFPWYTLCGIPF*TAPLPXMSTMSPTLYTFMYVESGIVPYVRNLR 62
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical
protein W06F12.2a protein.
Length = 562
Score = 34.7 bits (76), Expect = 0.039
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -1
Query: 199 PVFPWYTLCGIPF*TAPLPXMSTMSPTLYTFMYVESGIVPYVRNLR 62
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265
>U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical
protein ZK418.6 protein.
Length = 825
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 392 NLKRQPAPPKAAHIVSGTE 448
NL+R+PAPPK H+ S E
Sbjct: 462 NLRRRPAPPKQNHVASPAE 480
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +2
Query: 143 RQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQACCG 259
R S+ + SI SRV+R C C C CCG
Sbjct: 37 RSSASTTSSSETSIDTLGSSRVKRQGGCGCCGCGCGCCG 75
>AC006769-14|AAF60579.1| 378|Caenorhabditis elegans Hypothetical
protein Y45G12C.1 protein.
Length = 378
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -1
Query: 310 GVLDMLNT-DIDALRYNPSATRLLTITPRA*AVTLYTRPVFPWYTLCGI 167
G+LD T DID L+ N + +L + A T +T + W+TLC +
Sbjct: 272 GLLDYFPTFDIDDLKSNEKSLQLSAMLVYL-ARTQFTLDILKWHTLCAL 319
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 155 SSKGYATQSIPWKDRSRVQRDCSCSRCDCQQACCG 259
S+ + SI SRV+R C C C CCG
Sbjct: 40 STTSSSETSIDTLGSSRVKRQGGCGCCGCGCGCCG 74
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 155 SSKGYATQSIPWKDRSRVQRDCSCSRCDCQQACCG 259
S+ + SI SRV+R C C C CCG
Sbjct: 42 STTSSSETSIDTLGSSRVKRQGGCGCCGCGCGCCG 76
>AF099920-7|AAK29842.2| 336|Caenorhabditis elegans Hypothetical
protein H06H21.8a protein.
Length = 336
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +3
Query: 33 YRRGTRDLFARRFRTYGTIPLSTYMKVYKVGDIVDIXGNGAVQKGMPHKVY 185
Y +LF + F YG+IP + KVY DI G V + + KV+
Sbjct: 90 YYSKKENLFYKHFE-YGSIPNFPFPKVYFTEDINGEATGGIVAENLSEKVF 139
>AF099920-6|AAQ01531.1| 388|Caenorhabditis elegans Hypothetical
protein H06H21.8b protein.
Length = 388
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +3
Query: 33 YRRGTRDLFARRFRTYGTIPLSTYMKVYKVGDIVDIXGNGAVQKGMPHKVY 185
Y +LF + F YG+IP + KVY DI G V + + KV+
Sbjct: 90 YYSKKENLFYKHFE-YGSIPNFPFPKVYFTEDINGEATGGIVAENLSEKVF 139
>Z78060-2|CAB01490.1| 114|Caenorhabditis elegans Hypothetical
protein C34D1.2 protein.
Length = 114
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 197 RSRVQRDCSCSRCDCQQACCGRIIPKRI-NIRVEH 298
R R C C DC CG + +RI NIR+++
Sbjct: 53 RPRKNHKCECPYADCTCEKCGLVEKRRILNIRLQN 87
>U97194-9|AAB52452.1| 336|Caenorhabditis elegans Hypothetical
protein C37A2.8a protein.
Length = 336
Score = 27.9 bits (59), Expect = 4.5
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +3
Query: 168 MPHKVYHGKTGRVYNVTAHALGVIVNKRVAEGLYRSASISVLSMSSTPSADKTSLRESKR 347
+P +H + RVY + L + NKR E +L MS DK +E+++
Sbjct: 189 IPEHYHHSEEQRVYGTSHMRLSLNENKRKEE------IEKLLEMSKKTDMDKAKKKETEK 242
Query: 348 XRGY*RKPRL 377
R R+ +L
Sbjct: 243 HRDILRREKL 252
>AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical
protein Y73B6BL.1 protein.
Length = 751
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +2
Query: 116 QSWRHCRHXRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQAC 253
Q RHC C S Y W+ RSRV +C+ + Q C
Sbjct: 366 QPVRHCSEQDATCDSPFYWCDMKLWRCRSRVVYGGNCTGYEGTQIC 411
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
protein T01D3.3b protein.
Length = 1011
Score = 23.4 bits (48), Expect(2) = 4.9
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 386 TVNLKRQPAPPKAAHIVSGTEKPXLLAPIPYDS 484
T +L+R+P PK ++ T P P P +S
Sbjct: 68 TFSLQREPTSPKPKRPLNITSDPPADEPCPDES 100
Score = 22.6 bits (46), Expect(2) = 4.9
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Frame = +2
Query: 119 SWRHCRHXRQWCSSKG---YATQSIPWKDRSRVQRDCSCSRCDCQQACCGRIIP 271
SW+ + C ++G + S R R+Q DC CC ++P
Sbjct: 14 SWKEVHGQLRLCEAEGSCRHCADSRYSYYRCRMQDDCFIGEICDNGFCCPNVLP 67
>Z92775-2|CAB07162.2| 382|Caenorhabditis elegans Hypothetical
protein C06H5.2 protein.
Length = 382
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -1
Query: 352 LILFDSLKEVLSALGVL 302
LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216
>Z92775-1|CAB07161.2| 379|Caenorhabditis elegans Hypothetical
protein C06H5.1 protein.
Length = 379
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -1
Query: 352 LILFDSLKEVLSALGVL 302
LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 200 SRVQRDCSCSRCDCQQACCG 259
SRV+R C C C CCG
Sbjct: 55 SRVKRQGGCGCCGCGCGCCG 74
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,103,538
Number of Sequences: 27780
Number of extensions: 224876
Number of successful extensions: 787
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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