Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30869.Seq
         (511 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   0.79 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   5.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   5.6  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.8  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 9/52 (17%), Positives = 19/52 (36%)
 Frame = -3

Query: 206 HATCLSMVYFVWHTLLNCTIAXDVYNVSNFVHFHVRGERNSSICAEPASEQV 51
           H   L  V      +  CT+  + +     +  H++   +SS+   P    +
Sbjct: 245 HVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIKTHSDSSVVGSPRDSPI 296


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -3

Query: 140 DVYNVSNFVHFHVRGERNSSICAEPASEQVPGAAAVT 30
           ++YN S+ +  ++RGE  S+       + VP    +T
Sbjct: 376 NIYNASSRMENNLRGETQSNYREMEKRQSVPANDLLT 412


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 143 RQWCSSKGYATQSIPWKDRSRV 208
           R  C   GY  +SI W+  +RV
Sbjct: 509 RVTCPVAGYPIESIVWERDTRV 530


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 5/13 (38%), Positives = 7/13 (53%)
 Frame = +2

Query: 218 CSCSRCDCQQACC 256
           C C  C+ +  CC
Sbjct: 435 CECKTCNSKTKCC 447


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +3

Query: 138 IXGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVAEGLYRSASIS 287
           + GN  +     H+V   ++  V       L +IV+ ++ E L +S  I+
Sbjct: 324 LVGNSGIACVNEHQVLQRESFDVVAQNEETLQMIVSMKIMENLPQSGRIN 373


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -2

Query: 51  PWCRGGNPW 25
           PW   GNPW
Sbjct: 135 PWRTCGNPW 143


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -2

Query: 51  PWCRGGNPW 25
           PW   GNPW
Sbjct: 188 PWRTCGNPW 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,975
Number of Sequences: 438
Number of extensions: 2614
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)