Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30869.Seq
(511 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi... 114 3e-26
At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi... 114 3e-26
At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60... 113 9e-26
At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) simi... 113 9e-26
At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138... 37 0.007
At1g54926.1 68414.m06272 hypothetical protein 30 0.79
At3g45880.1 68416.m04965 hypothetical protein 29 1.4
At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative... 29 2.4
At5g25320.1 68418.m03004 ACT domain-containing protein contains ... 28 3.2
At5g56080.1 68418.m06997 nicotianamine synthase, putative simila... 28 4.2
At4g24350.1 68417.m03494 phosphorylase family protein contains P... 27 5.5
At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transfera... 27 7.3
At1g76990.3 68414.m08966 ACT domain containing protein low simil... 27 7.3
At1g76990.2 68414.m08965 ACT domain containing protein low simil... 27 7.3
At1g76990.1 68414.m08964 ACT domain containing protein low simil... 27 7.3
At5g45110.1 68418.m05536 ankyrin repeat family protein / BTB/POZ... 27 9.7
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim... 27 9.7
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-... 27 9.7
At4g30860.1 68417.m04381 SET domain-containing protein low simil... 27 9.7
At2g13150.1 68415.m01450 expressed protein contains a bZIP trans... 27 9.7
>At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Similar
to ribosomal protein L21 (gb|L38826). ESTs
gb|AA395597,gb|ATTS5197 come from this gene
Length = 164
Score = 114 bits (275), Expect = 3e-26
Identities = 55/111 (49%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Frame = +3
Query: 15 MTNSKGYRRGTRDLFARRFRTYGTIPLSTYMKVYKVGDIVDIXGNGAVQKGMPHKVYHGK 194
M G R TRDLFAR FR G IPLSTY++ +KVGD VD+ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 195 TGRVYNVTAHALGVIVNKRVAEGLYRS-ASISVLSMSSTPSADKTSLRESK 344
TGR++NVT A+GV VNK++ + R + V + + A++ LR+ K
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKK 111
Score = 72.9 bits (171), Expect = 1e-13
Identities = 36/74 (48%), Positives = 48/74 (64%)
Frame = +2
Query: 260 RIIPKRINIRVEHVKHSKCRQDFLKRVKENXRLLKEAKAAGKTVNLKRQPAPPKAAHIVS 439
RII KRI++RVEHV+ S+C ++F R K+N L AKA G+T++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVE 142
Query: 440 GTEKPXLLAPIPYD 481
G + PIPYD
Sbjct: 143 GMTL-ETVTPIPYD 155
>At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Similar
to L21 family of ribosomal protein; amino acid sequence
is identical to F21M12.8
Length = 164
Score = 114 bits (275), Expect = 3e-26
Identities = 55/111 (49%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Frame = +3
Query: 15 MTNSKGYRRGTRDLFARRFRTYGTIPLSTYMKVYKVGDIVDIXGNGAVQKGMPHKVYHGK 194
M G R TRDLFAR FR G IPLSTY++ +KVGD VD+ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 195 TGRVYNVTAHALGVIVNKRVAEGLYRS-ASISVLSMSSTPSADKTSLRESK 344
TGR++NVT A+GV VNK++ + R + V + + A++ LR+ K
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKK 111
Score = 72.9 bits (171), Expect = 1e-13
Identities = 36/74 (48%), Positives = 48/74 (64%)
Frame = +2
Query: 260 RIIPKRINIRVEHVKHSKCRQDFLKRVKENXRLLKEAKAAGKTVNLKRQPAPPKAAHIVS 439
RII KRI++RVEHV+ S+C ++F R K+N L AKA G+T++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVE 142
Query: 440 GTEKPXLLAPIPYD 481
G + PIPYD
Sbjct: 143 GMTL-ETVTPIPYD 155
>At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60S
ribosomal protein L21 GI:3885884 from [Oryza sativa]
Length = 164
Score = 113 bits (271), Expect = 9e-26
Identities = 54/111 (48%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Frame = +3
Query: 15 MTNSKGYRRGTRDLFARRFRTYGTIPLSTYMKVYKVGDIVDIXGNGAVQKGMPHKVYHGK 194
M G R TRDLFAR FR G IPLSTY++ +KVGD VD+ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 195 TGRVYNVTAHALGVIVNKRVAEGLYRS-ASISVLSMSSTPSADKTSLRESK 344
TGR++NVT A+GV VNK++ + R + V + + A++ LR+ +
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQ 111
Score = 73.7 bits (173), Expect = 6e-14
Identities = 36/74 (48%), Positives = 49/74 (66%)
Frame = +2
Query: 260 RIIPKRINIRVEHVKHSKCRQDFLKRVKENXRLLKEAKAAGKTVNLKRQPAPPKAAHIVS 439
RII KRI++RVEHV+ S+C ++F R K+N L +AKA G+T++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVE 142
Query: 440 GTEKPXLLAPIPYD 481
G + PIPYD
Sbjct: 143 GMTL-ETVTPIPYD 155
>At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) similar
to 60S ribosomal protein L21 GB:Q43291 GI:2851508 from
[Arabidopsis thaliana]
Length = 164
Score = 113 bits (271), Expect = 9e-26
Identities = 54/111 (48%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Frame = +3
Query: 15 MTNSKGYRRGTRDLFARRFRTYGTIPLSTYMKVYKVGDIVDIXGNGAVQKGMPHKVYHGK 194
M G R TRDLFAR FR G IPLSTY++ +KVGD VD+ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 195 TGRVYNVTAHALGVIVNKRVAEGLYRS-ASISVLSMSSTPSADKTSLRESK 344
TGR++NVT A+GV VNK++ + R + V + + A++ LR+ +
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQ 111
Score = 73.7 bits (173), Expect = 6e-14
Identities = 36/74 (48%), Positives = 49/74 (66%)
Frame = +2
Query: 260 RIIPKRINIRVEHVKHSKCRQDFLKRVKENXRLLKEAKAAGKTVNLKRQPAPPKAAHIVS 439
RII KRI++RVEHV+ S+C ++F R K+N L +AKA G+T++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVE 142
Query: 440 GTEKPXLLAPIPYD 481
G + PIPYD
Sbjct: 143 GMTL-ETVTPIPYD 155
>At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 672
Score = 37.1 bits (82), Expect = 0.007
Identities = 23/65 (35%), Positives = 30/65 (46%)
Frame = +3
Query: 165 GMPHKVYHGKTGRVYNVTAHALGVIVNKRVAEGLYRSASISVLSMSSTPSADKTSLRESK 344
G P K Y+G GR+ AHAL NK + L+R L+ P AD+ S + S
Sbjct: 182 GKPKKTYNGTYGRLLAYAAHALAEGQNKLEPKELWREPKDQALAWK--PCADQRSWKPSD 239
Query: 345 RXRGY 359
GY
Sbjct: 240 GKNGY 244
>At1g54926.1 68414.m06272 hypothetical protein
Length = 273
Score = 30.3 bits (65), Expect = 0.79
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 233 CDCQQACCGRIIPKRINIRVEHVKHSKCRQDFLKRVKENXRLL 361
CD + C R+ PK +I +H KH K FLK + LL
Sbjct: 59 CDLSEGCKNRMTPKAFHIISQHPKHHK---TFLKESQHILELL 98
>At3g45880.1 68416.m04965 hypothetical protein
Length = 431
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = -1
Query: 409 WLSLQVDGLAGSLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDALRYNPSATRL 245
W +Q D FLQ L SL VLS D ++D + ++ PSAT L
Sbjct: 299 WYDMQFDIKYAYFNFLQSLLYKSSSLNPVLSWREDEDSESSDAEGSKFTPSATNL 353
>At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative /
adrenodoxin reductase, putative strong similarity to
Ferredoxin--NADP reductase, chloroplast precursor (EC
1.18.1.2) (FNR) from {Pisum sativum} SP|P10933,
{Mesembryanthemum crystallinum} SP|P41343, {Spinacia
oleracea} SP|P00455, [Capsicum annuum] GI:6899972
Length = 369
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 114 YKVGDIVDIXGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVN 245
Y+ G V + +G + G PHKV R+Y++ + ALG + N
Sbjct: 125 YREGQSVGVIADGIDKNGKPHKV------RLYSIASSALGDLGN 162
>At5g25320.1 68418.m03004 ACT domain-containing protein contains
Pfam ACT domain PF01842
Length = 500
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 152 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 244
C +GY+ ++ KDR R+ D C+ D Q
Sbjct: 291 CEERGYSIVTVKSKDRRRLMFDTICTLVDMQ 321
>At5g56080.1 68418.m06997 nicotianamine synthase, putative similar
to nicotianamine synthase [Lycopersicon
esculentum][GI:4753801], nicotianamine synthase 2
[Hordeum vulgare][GI:4894912]
Length = 320
Score = 27.9 bits (59), Expect = 4.2
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = -3
Query: 263 SFRNTLVDNHTESMSSHVVHATCLSMVYFVWHT--LLNCTIAXDVYNVSNFVHFHVRGER 90
+F N +D+H +++S++V ++HT +LN D Y+V F+ V ++
Sbjct: 151 TFHNFDIDSHANTLASNLVSRDSDLSKRMIFHTTDVLNAKEGLDQYDVV-FLAALVGMDK 209
Query: 89 NSSICAEPASEQ--VPGAAAVTLGVRHLRA 6
S + A E+ PGA + LRA
Sbjct: 210 ESKVKAIEHLEKHMAPGAVVMLRSAHGLRA 239
>At4g24350.1 68417.m03494 phosphorylase family protein contains Pfam
PF01048: Phosphorylase family
Length = 336
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 140 DVYNVSNFVHFHVRGERNSSI 78
DV+NV VHF + G N+S+
Sbjct: 114 DVFNVKGIVHFGIAGNMNNSM 134
>At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 450
Score = 27.1 bits (57), Expect = 7.3
Identities = 18/54 (33%), Positives = 22/54 (40%)
Frame = -3
Query: 248 LVDNHTESMSSHVVHATCLSMVYFVWHTLLNCTIAXDVYNVSNFVHFHVRGERN 87
L N S V + + FVW LLN DV+ V +H R ERN
Sbjct: 346 LTHNGWNSTVESVFEGVPMICMPFVWDQLLNARFVSDVWMVG--LHLEGRIERN 397
>At1g76990.3 68414.m08966 ACT domain containing protein low
similarity to uridylyltransferase SP|P56884 from
Rhizobium meliloti; contains Pfam ACT domain PF01842
Length = 453
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 152 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 244
C KGY+ ++ +DR ++ D C+ D Q
Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQ 289
>At1g76990.2 68414.m08965 ACT domain containing protein low
similarity to uridylyltransferase SP|P56884 from
Rhizobium meliloti; contains Pfam ACT domain PF01842
Length = 453
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 152 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 244
C KGY+ ++ +DR ++ D C+ D Q
Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQ 289
>At1g76990.1 68414.m08964 ACT domain containing protein low
similarity to uridylyltransferase SP|P56884 from
Rhizobium meliloti; contains Pfam ACT domain PF01842
Length = 453
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 152 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 244
C KGY+ ++ +DR ++ D C+ D Q
Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQ 289
>At5g45110.1 68418.m05536 ankyrin repeat family protein / BTB/POZ
domain-containing protein contains Pfam domain, PF00023:
Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
Length = 586
Score = 26.6 bits (56), Expect = 9.7
Identities = 28/92 (30%), Positives = 43/92 (46%)
Frame = +3
Query: 63 RRFRTYGTIPLSTYMKVYKVGDIVDIXGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIV 242
RRF YG+ L YM Y DI+D + +KG H+ R+ + L V
Sbjct: 500 RRFFPYGSEVLDKYMAEYIDDDILD---DFHFEKGSTHE------RRLKRMRYRELKDDV 550
Query: 243 NKRVAEGLYRSASISVLSMSSTPSADKTSLRE 338
K ++ + S LS SS+PS+ +S+R+
Sbjct: 551 QKAYSKDKESKIARSCLSASSSPSS--SSIRD 580
>At5g41240.1 68418.m05011 glutathione S-transferase, putative
similar to glutathione S-transferase, GST 10b
GB:CAA10662 [Arabidopsis thaliana] 37349.
Length = 591
Score = 26.6 bits (56), Expect = 9.7
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 119 SWRHCRHXRQWCSS 160
+WR RH ++WCS+
Sbjct: 385 AWRELRHNKKWCST 398
>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 948
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 254 CGRIIPKRINIRVEHVKHSKCRQDFLKRVKE-NXRLLKEAKAAGKTVN 394
C +++ R N+ ++ + CRQ F+K + E R ++E KA +T +
Sbjct: 620 CIKLLCHR-NVEMKKIWLESCRQSFVKMISEKQLREMEELKAKTQTTH 666
>At4g30860.1 68417.m04381 SET domain-containing protein low
similarity to IL-5 promoter REII-region-binding protein
[Homo sapiens] GI:12642795; contains Pfam profile
PF00856: SET domain
Length = 497
Score = 26.6 bits (56), Expect = 9.7
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +2
Query: 194 DRSRVQR-DC-SCSR-CDCQQACCGRIIPKRINIRVEHVKH 307
DRS V R C SCS+ C C ++C R K I++ +H
Sbjct: 295 DRSCVCRVQCISCSKGCSCPESCGNRPFRKEKKIKIVKTEH 335
>At2g13150.1 68415.m01450 expressed protein contains a bZIP
transcription factor basic domain signature (PDOC00036)
Length = 262
Score = 26.6 bits (56), Expect = 9.7
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +3
Query: 294 SMSSTPSADKTSLRESKRXRGY*RKPRLPARPST*RDSQLPLKLPTSSVELRN 452
S +STPS ++ + S P L PS+ R + +PL P++SVE R+
Sbjct: 4 SDNSTPSRPRSITQPSLAFSSL---PPLSPSPSSSRRNSIPLMNPSASVESRD 53
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,531,524
Number of Sequences: 28952
Number of extensions: 208823
Number of successful extensions: 641
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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