Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30868.Seq
         (409 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         25   0.38 
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    21   4.6  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    21   6.1  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 24.6 bits (51), Expect = 0.38
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 168 AKSKNHTNHNQNRKAHRNGIKKPRKTRHEPP 260
           ++SK      +  +  RN   +PR +R EPP
Sbjct: 213 SRSKRQPKTGREDQTRRNPYYRPRTSRTEPP 243


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +1

Query: 244 PGTNHPWHGSKIFKGSKGLQEG*PEASQATREG 342
           PG +    G  I  G  G   G PE  +  REG
Sbjct: 50  PGQSGQCFGPSICCGPFGCLVGTPETLRCQREG 82


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 242 LPWLFDTISVSFAVLVMI 189
           L W + TIS++F + V +
Sbjct: 3   LKWYYITISMAFIIFVSL 20


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,055
Number of Sequences: 336
Number of extensions: 1445
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8857716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)