Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30868.Seq
(409 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0661 - 16726958-16726966,16727133-16727234 51 3e-07
01_02_0115 - 11248021-11248101,11249017-11249118 51 3e-07
02_03_0057 + 14528676-14528951,14529658-14529702 28 3.3
06_03_0336 + 19671500-19672150,19672681-19673301 27 4.3
04_03_0166 + 12175952-12176045,12176080-12176762 27 4.3
09_06_0010 - 20193577-20193921,20194014-20194160,20194239-201944... 27 5.7
03_06_0273 + 32787021-32787434,32788096-32788221,32788305-327883... 27 5.7
02_03_0007 - 13875735-13875826,13876217-13877465 27 5.7
01_05_0017 - 17199365-17199757,17200040-17200156 27 5.7
03_02_0952 + 12666750-12666777,12666965-12667185,12669464-126696... 27 7.6
02_02_0556 - 11444512-11445577,11445730-11446007 27 7.6
>05_03_0661 - 16726958-16726966,16727133-16727234
Length = 36
Score = 51.2 bits (117), Expect = 3e-07
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTR 248
MAKSKNHT HNQ+ KAH+NGIKKP++ R
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPKRHR 28
>01_02_0115 - 11248021-11248101,11249017-11249118
Length = 60
Score = 51.2 bits (117), Expect = 3e-07
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTR 248
MAKSKNHT HNQ+ KAH+NGIKKP++ R
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPKRHR 28
>02_03_0057 + 14528676-14528951,14529658-14529702
Length = 106
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 318 SQPSNSRGRLREKLPEKPXPRNE 386
S+PS S + EK+PE+P NE
Sbjct: 26 SEPSTSASSIDEKIPEQPSVENE 48
>06_03_0336 + 19671500-19672150,19672681-19673301
Length = 423
Score = 27.5 bits (58), Expect = 4.3
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 262 WHGSKIFKGSKGLQEG*PEASQATREGG 345
WH FK S+ G PEA+ A EGG
Sbjct: 223 WHEINQFKSSEKSLVGMPEAAAAEEEGG 250
>04_03_0166 + 12175952-12176045,12176080-12176762
Length = 258
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 318 SQPSNSRGRLREKLPEKPXPRNE 386
+QPS S + EK+PE+P NE
Sbjct: 216 AQPSTSASSIDEKVPEQPSVENE 238
>09_06_0010 -
20193577-20193921,20194014-20194160,20194239-20194495,
20194619-20194826
Length = 318
Score = 27.1 bits (57), Expect = 5.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 171 KSKNHTNHNQNRKAHRNGIKKPRKTRHEPPLAWXQNF 281
++KN +HN KA NG KPR PP++ + F
Sbjct: 219 RAKNAASHN---KASGNGHAKPRAPHLPPPVSQRRQF 252
>03_06_0273 +
32787021-32787434,32788096-32788221,32788305-32788378,
32788468-32788537,32788622-32788677,32788762-32788833,
32788945-32789039,32789196-32789262,32789359-32789488,
32789578-32789793,32789887-32790017,32790719-32790893,
32790977-32791067,32792151-32792308,32792763-32792951,
32793066-32793125
Length = 707
Score = 27.1 bits (57), Expect = 5.7
Identities = 14/59 (23%), Positives = 25/59 (42%)
Frame = +1
Query: 106 CVXIYSNDFIFLYRIENSSKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNHPWHGSKIF 282
C +Y +FL++ +W+ I I + +V S+G P T + S+ F
Sbjct: 529 CSQVYELSQVFLHKDWIMEQWEKNYYITAIAGATNGSSLVVMSKGTPYTQQSYKVSESF 587
>02_03_0007 - 13875735-13875826,13876217-13877465
Length = 446
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 318 SQPSNSRGRLREKLPEKPXPRNE 386
S+PS S + EK PE+P NE
Sbjct: 25 SEPSTSASSIDEKFPEQPSVENE 47
>01_05_0017 - 17199365-17199757,17200040-17200156
Length = 169
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 318 SQPSNSRGRLREKLPEKPXPRNE 386
S+PS S + EK+PE+P NE
Sbjct: 130 SEPSCSASSIEEKVPEQPSVENE 152
>03_02_0952 +
12666750-12666777,12666965-12667185,12669464-12669649,
12670147-12670212,12670335-12670427,12670528-12670659,
12670794-12670895,12670993-12671070,12671148-12671219,
12672185-12672292,12672368-12672465,12672904-12672964,
12673058-12673120,12673228-12673284,12673571-12673729,
12674310-12674441,12674516-12674602,12674667-12674738,
12675899-12675985,12676052-12676427,12676727-12676788,
12676946-12677014,12677096-12677142,12677189-12677342,
12677874-12677999
Length = 911
Score = 26.6 bits (56), Expect = 7.6
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 115 IYSNDFIFLYRIENSSKWQSQRIIQIITKTAKLTEMVSKSQG 240
+ D + RIEN +RI++ TK +KL ++ K++G
Sbjct: 214 VEDTDMVTFERIENEFGVTVRRIVEGETKVSKLGKLQCKNEG 255
>02_02_0556 - 11444512-11445577,11445730-11446007
Length = 447
Score = 26.6 bits (56), Expect = 7.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 318 SQPSNSRGRLREKLPEKPXPRNE 386
S+PS S + EK+PE+P NE
Sbjct: 26 SEPSTSTDLIDEKVPEQPSVENE 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,554,272
Number of Sequences: 37544
Number of extensions: 141691
Number of successful extensions: 366
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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