Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30868.Seq
(409 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82256-2|CAB05115.1| 62|Caenorhabditis elegans Hypothetical pr... 57 6e-09
AL032657-13|CAB76744.1| 87|Caenorhabditis elegans Hypothetical... 47 5e-06
AL032625-6|CAN86641.1| 167|Caenorhabditis elegans Hypothetical ... 44 3e-05
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 27 5.2
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 27 5.2
U41994-7|AAY55868.1| 155|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z74043-3|CAA98546.1| 125|Caenorhabditis elegans Hypothetical pr... 26 9.1
Z74043-2|CAA98545.1| 243|Caenorhabditis elegans Hypothetical pr... 26 9.1
AC006757-4|AAF60545.1| 610|Caenorhabditis elegans Hypothetical ... 26 9.1
AC006679-13|AAL38965.1| 644|Caenorhabditis elegans Coelomocyte ... 26 9.1
>Z82256-2|CAB05115.1| 62|Caenorhabditis elegans Hypothetical
protein B0513.3 protein.
Length = 62
Score = 56.8 bits (131), Expect = 6e-09
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRK 242
MAKSKNHTNHNQN+KAHRNGI KP+K
Sbjct: 1 MAKSKNHTNHNQNKKAHRNGITKPKK 26
>AL032657-13|CAB76744.1| 87|Caenorhabditis elegans Hypothetical
protein Y47H9C.14 protein.
Length = 87
Score = 47.2 bits (107), Expect = 5e-06
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = +3
Query: 171 KSKNHTNHNQNRKAHRNGIKKPRK 242
K +NHTNHN+N KAHRNGI KP+K
Sbjct: 14 KPENHTNHNRNNKAHRNGITKPKK 37
>AL032625-6|CAN86641.1| 167|Caenorhabditis elegans Hypothetical
protein Y37H9A.5 protein.
Length = 167
Score = 44.4 bits (100), Expect = 3e-05
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = +3
Query: 171 KSKNHTNHNQNRKAHRNGIKKPR 239
KSKNHTNHNQN AHR GI KP+
Sbjct: 80 KSKNHTNHNQNNTAHRIGITKPK 102
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 27.1 bits (57), Expect = 5.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 225 YHFCELCGFGYDLYDSL 175
Y+FC++CGFG DS+
Sbjct: 1685 YYFCKVCGFGSTSADSV 1701
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 27.1 bits (57), Expect = 5.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 225 YHFCELCGFGYDLYDSL 175
Y+FC++CGFG DS+
Sbjct: 1685 YYFCKVCGFGSTSADSV 1701
>U41994-7|AAY55868.1| 155|Caenorhabditis elegans Hypothetical
protein F59A6.10 protein.
Length = 155
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 344 PPSRVAWLASGYPSCKPFDP 285
PPS+ L +G PSCK F P
Sbjct: 117 PPSQKCELENGKPSCKKFIP 136
>Z74043-3|CAA98546.1| 125|Caenorhabditis elegans Hypothetical
protein T19B10.4b protein.
Length = 125
Score = 26.2 bits (55), Expect = 9.1
Identities = 8/31 (25%), Positives = 16/31 (51%)
Frame = +3
Query: 171 KSKNHTNHNQNRKAHRNGIKKPRKTRHEPPL 263
+ K + +N+N K G + + H+PP+
Sbjct: 35 QKKGNNQNNKNNKNQNGGNRNQNRQHHQPPM 65
>Z74043-2|CAA98545.1| 243|Caenorhabditis elegans Hypothetical
protein T19B10.4a protein.
Length = 243
Score = 26.2 bits (55), Expect = 9.1
Identities = 8/31 (25%), Positives = 16/31 (51%)
Frame = +3
Query: 171 KSKNHTNHNQNRKAHRNGIKKPRKTRHEPPL 263
+ K + +N+N K G + + H+PP+
Sbjct: 35 QKKGNNQNNKNNKNQNGGNRNQNRQHHQPPM 65
>AC006757-4|AAF60545.1| 610|Caenorhabditis elegans Hypothetical
protein Y40C7B.5 protein.
Length = 610
Score = 26.2 bits (55), Expect = 9.1
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = +1
Query: 34 VKNSLNINKII*QN--KYFKIK*TIRCVXIYSNDF---IFLYRIENSSKWQSQRIIQIIT 198
+K S N+NKI + Y KI + C N F Y ++S KW+ ++ +T
Sbjct: 178 IKKSPNVNKIQKDDTSNYQKI---LVCSNALYNGFDKTTKKYNSDSSEKWKFIKVNYFVT 234
Query: 199 KTAKLTEMVSKSQG 240
KT + +QG
Sbjct: 235 KTTTTNNATNTTQG 248
>AC006679-13|AAL38965.1| 644|Caenorhabditis elegans Coelomocyte
uptake defective protein5, isoform b protein.
Length = 644
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = -3
Query: 266 CQGWFVPGLPWLFDTISV---SFAVLVMICMIL*LC 168
C G + G+ W FDT+ + VL++ + L LC
Sbjct: 310 CNGRIIKGVGWSFDTLLIGGTDIFVLILCILSLILC 345
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,518,685
Number of Sequences: 27780
Number of extensions: 128762
Number of successful extensions: 365
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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