Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30866.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    75   6e-15
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    61   1e-10
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    56   3e-09
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    49   3e-07
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    46   4e-06
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    38   6e-04
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    29   0.29 
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    29   0.39 

>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 74.9 bits (176), Expect = 6e-15
 Identities = 33/77 (42%), Positives = 45/77 (58%)
 Frame = +2

Query: 119 LSKANFETVITTTXYILVEFYAPWCGHCXSLAPXYGQXSNKAG*RKSPIKLAXVDATQEQ 298
           ++K     +IT    ++V+FYAPWCGHC +LAP Y   +++    K  I L  VD T+E 
Sbjct: 27  VNKEGLNELITADKVLMVKFYAPWCGHCKALAPEYESAADEL--EKDGISLVEVDCTEEG 84

Query: 299 XLAXSYGVRGYPTLKFF 349
            L   Y +RGYPTL  F
Sbjct: 85  DLCSEYSIRGYPTLNVF 101



 Score = 66.9 bits (156), Expect = 2e-12
 Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
 Frame = +2

Query: 104 ENVLVLSKANFETVITT-TXYILVEFYAPWCGHCXSLAPXYGQXSNKAG*RKSPIKLAXV 280
           E+++VL   NF+ ++   T  +LVEFYAPWCGHC +LAP Y + + +     S + +A +
Sbjct: 355 EDLVVLVADNFDDIVMDETKDVLVEFYAPWCGHCKNLAPTYEKLAEEYS-DDSNVVVAKI 413

Query: 281 DATQEQXLAXSYGVRGYPTLKFF 349
           DAT+      S  + G+PT+ FF
Sbjct: 414 DATEND---ISVSISGFPTIMFF 433


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 60.9 bits (141), Expect = 1e-10
 Identities = 30/100 (30%), Positives = 45/100 (45%)
 Frame = +2

Query: 44  LIFTAIALLRLALGXEVXTXENVLVLSKANFETVITTTXYILVEFYAPWCGHCXSLAPXY 223
           L     +L+    G       N + L+  NF   +      LV FYAPWCG+C  L P Y
Sbjct: 11  LFLACFSLVSGVFGYSPMFGSNTIELNSKNFRKFVKAKGPSLVVFYAPWCGYCKKLVPTY 70

Query: 224 GQXSNKAG*RKSPIKLAXVDATQEQXLAXSYGVRGYPTLK 343
            + ++       P+     DA Q + +   Y V+G+PT+K
Sbjct: 71  QKLASNLH-SLLPVTAVDCDADQNRAVCSQYQVQGFPTIK 109


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 56.0 bits (129), Expect = 3e-09
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
 Frame = +2

Query: 89  EVXTXENVLVLSKANFETVITTTXY-ILVEFYAPWCGHCXSLAPXYGQXSNKAG*RKSPI 265
           ++    NV+ L   NF+ V+      +LVEFYA WCG+C  LAP Y +   K    +  +
Sbjct: 135 KIVLPSNVVELDSLNFDKVVMDDKKDVLVEFYADWCGYCKRLAPTY-ETLGKVFKNEPNV 193

Query: 266 KLAXVDATQEQXLAXSYGVRGYPTLKFF 349
           ++  ++A     +   + V  +PT+KFF
Sbjct: 194 EIVKINADVFADIGRLHEVASFPTIKFF 221



 Score = 55.6 bits (128), Expect = 4e-09
 Identities = 32/107 (29%), Positives = 50/107 (46%)
 Frame = +2

Query: 29  IEMRVLIFTAIALLRLALGXEVXTXENVLVLSKANFETVITTTXYILVEFYAPWCGHCXS 208
           + + +L F   AL  L     V   +++  L      T+  +    L+EFYA WCGHC S
Sbjct: 1   MRLPLLSFVIFALFALVFASGVVELQSLNELEN----TIRASKKGALIEFYATWCGHCKS 56

Query: 209 LAPXYGQXSNKAG*RKSPIKLAXVDATQEQXLAXSYGVRGYPTLKFF 349
           LAP Y +         + + +  +DA     +A  Y + G+PTL +F
Sbjct: 57  LAPVYEELGALFE-DHNDVLIGKIDADTHSDVADKYHITGFPTLIWF 102


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 49.2 bits (112), Expect = 3e-07
 Identities = 23/78 (29%), Positives = 42/78 (53%)
 Frame = +2

Query: 116 VLSKANFETVITTTXYILVEFYAPWCGHCXSLAPXYGQXSNKAG*RKSPIKLAXVDATQE 295
           + S  ++ + I  + Y+ V+ YA WCG C +++P + Q ++K    K     A V+  ++
Sbjct: 6   IRSYQHWISTIPKSGYLAVDCYADWCGPCKAISPLFSQLASKYASPK--FVFAKVNVDEQ 63

Query: 296 QXLAXSYGVRGYPTLKFF 349
           + +A   GV+  PT  FF
Sbjct: 64  RQIASGLGVKAMPTFVFF 81


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 45.6 bits (103), Expect = 4e-06
 Identities = 22/74 (29%), Positives = 36/74 (48%)
 Frame = +2

Query: 116 VLSKANFETVITTTXYILVEFYAPWCGHCXSLAPXYGQXSNKAG*RKSPIKLAXVDATQE 295
           V   + F++++     ++V+F+A WCG C ++AP + Q SN      S      VD  Q 
Sbjct: 5   VSDSSEFKSIVCQDKLVVVDFFATWCGPCKAIAPKFEQFSN----TYSDATFIKVDVDQL 60

Query: 296 QXLAXSYGVRGYPT 337
             +A   GV   P+
Sbjct: 61  SEIAAEAGVHAMPS 74


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 38.3 bits (85), Expect = 6e-04
 Identities = 23/78 (29%), Positives = 34/78 (43%)
 Frame = +2

Query: 116 VLSKANFETVITTTXYILVEFYAPWCGHCXSLAPXYGQXSNKAG*RKSPIKLAXVDATQE 295
           V S  ++ T I+     +V+FYA WCG C  L P   + S     +        V+A + 
Sbjct: 22  VESFGDYNTRISADKVTVVDFYADWCGPCKYLKPFLEKLSE----QNQKASFIAVNADKF 77

Query: 296 QXLAXSYGVRGYPTLKFF 349
             +A   GV   PT+  F
Sbjct: 78  SDIAQKNGVYALPTMVLF 95


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 29.5 bits (63), Expect = 0.29
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +2

Query: 170 VEFYAPWCGHCXSLAPXYGQXSNKAG*R--KSPIKLAXVDATQEQXLAXSYGVRGYPTLK 343
           +++Y P CG C  L P +     KA  +   S      VD ++E  L+    +R  PTL 
Sbjct: 47  IKYYLPSCGACKRLGPMWDNMVEKAKEQVEGSNFHFGEVDCSKE--LSSCANIRAVPTLY 104

Query: 344 FF 349
            +
Sbjct: 105 LY 106


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +2

Query: 164 ILVEFYAPWCGHCXSLAPXYGQXSNKAG*RKSPIKLAXVDATQEQXLAXSYGVRGYP 334
           IL+ FYAPW   C  +   + Q +      K+ + L  ++A +   +A S+ V   P
Sbjct: 23  ILLNFYAPWAAPCKQMNQVFDQFAKDT---KNAVFL-KIEAEKFSDIAESFDVNAVP 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,348,699
Number of Sequences: 5004
Number of extensions: 17456
Number of successful extensions: 35
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)