Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30866.Seq
(499 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0) 110 7e-25
SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.) 90 8e-19
SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0) 82 3e-16
SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0) 77 1e-14
SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0) 71 4e-13
SB_3640| Best HMM Match : Thioredoxin (HMM E-Value=4.3e-33) 65 4e-11
SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41) 58 4e-09
SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 9e-09
SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 9e-08
SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27) 52 2e-07
SB_20276| Best HMM Match : Thioredoxin (HMM E-Value=9.8e-06) 52 3e-07
SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0) 46 1e-05
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32) 45 3e-05
SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 5e-04
SB_38445| Best HMM Match : ERp29 (HMM E-Value=2.2e-19) 41 5e-04
SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21) 38 0.006
SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19) 36 0.019
SB_218| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_13271| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05) 27 6.5
SB_44457| Best HMM Match : Thioredoxin (HMM E-Value=2.2e-07) 27 8.6
>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 536
Score = 110 bits (264), Expect = 7e-25
Identities = 50/105 (47%), Positives = 69/105 (65%)
Frame = +2
Query: 35 MRVLIFTAIALLRLALGXEVXTXENVLVLSKANFETVITTTXYILVEFYAPWCGHCXSLA 214
M++L +AL+ LA E+ E+VLVL++ NF+ + ++LVEFYAPWCGHC +LA
Sbjct: 1 MKLLPVLLLALVSLAYSEEIKEEEDVLVLTEKNFDEAVAANKHVLVEFYAPWCGHCKALA 60
Query: 215 PXYGQXSNKAG*RKSPIKLAXVDATQEQXLAXSYGVRGYPTLKFF 349
P Y + + + KS IKLA VDAT E L + V+GYPT+KFF
Sbjct: 61 PEYAKAAGQLKSEKSEIKLAKVDATAETKLGEKFQVQGYPTIKFF 105
Score = 55.6 bits (128), Expect = 2e-08
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = +2
Query: 110 VLVLSKANFETVITTTXY-ILVEFYAPWCGHCXSLAPXYGQXSNKAG*RKSPIKLAXVDA 286
V VL NF+ V + VEFYAPWCGHC LAP + Q K + I +A +D+
Sbjct: 386 VKVLCGKNFDEVARNKDKNVFVEFYAPWCGHCKQLAPIWDQLGEKYK-DHADIVVAKMDS 444
Query: 287 TQEQXLAXSYGVRGYPTLKFF 349
T + V +PT+K+F
Sbjct: 445 TANE--VEGVKVHSFPTIKYF 463
Score = 34.7 bits (76), Expect = 0.043
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 367 DYSXGRQADDIISWLXXKXGPPA 435
+Y+ GR A +I+SWL K GPPA
Sbjct: 112 EYAGGRTAPEIVSWLNKKTGPPA 134
>SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 90.2 bits (214), Expect = 8e-19
Identities = 42/87 (48%), Positives = 52/87 (59%)
Frame = +2
Query: 89 EVXTXENVLVLSKANFETVITTTXYILVEFYAPWCGHCXSLAPXYGQXSNKAG*RKSPIK 268
EV ++V VL+ NF+ VI ILVEFYAPWCGHC SLAP Y + + K P+
Sbjct: 56 EVKEEDDVSVLNSKNFDRVIEENNIILVEFYAPWCGHCKSLAPEYAKAAKKMKLNDPPVP 115
Query: 269 LAXVDATQEQXLAXSYGVRGYPTLKFF 349
A +DAT +A + V GYPTLK F
Sbjct: 116 FAKMDATVASDIAQRFDVSGYPTLKIF 142
Score = 87.4 bits (207), Expect = 6e-18
Identities = 41/79 (51%), Positives = 49/79 (62%)
Frame = +2
Query: 113 LVLSKANFETVITTTXYILVEFYAPWCGHCXSLAPXYGQXSNKAG*RKSPIKLAXVDATQ 292
L L+K NF V+ +LVEF+APWCGHC LAP Y + + + PI LA VDAT
Sbjct: 179 LTLTKENFTEVVNRESLMLVEFFAPWCGHCKQLAPEYEKAAQELQKHDPPIPLAIVDATI 238
Query: 293 EQXLAXSYGVRGYPTLKFF 349
E LA Y V+GYPTLK F
Sbjct: 239 ESELAQKYEVQGYPTLKVF 257
Score = 44.4 bits (100), Expect = 5e-05
Identities = 27/78 (34%), Positives = 41/78 (52%)
Frame = +2
Query: 113 LVLSKANFETVITTTXYILVEFYAPWCGHCXSLAPXYGQXSNKAG*RKSPIKLAXVDATQ 292
+V+ K E V +L+EFYAPWCG +L P + + K+ I +A +DAT
Sbjct: 529 VVVGKTFDEIVNDPKKDVLIEFYAPWCG--IALEPTFKKLGKHFRNDKN-IVIAKIDATA 585
Query: 293 EQXLAXSYGVRGYPTLKF 346
+ +Y V G+PT+ F
Sbjct: 586 ND-VPSTYAVEGFPTIYF 602
>SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 295
Score = 81.8 bits (193), Expect = 3e-16
Identities = 41/103 (39%), Positives = 58/103 (56%)
Frame = +2
Query: 53 TAIALLRLALGXEVXTXENVLVLSKANFETVITTTXYILVEFYAPWCGHCXSLAPXYGQX 232
T + L L T V+ L+K NF+ V+ + LVEFYAPWCGHC LAP Y Q
Sbjct: 5 TVLFKLFLLFSISSLTQGKVIDLTKDNFDEVVNGEKFALVEFYAPWCGHCKQLAPTYEQL 64
Query: 233 SNKAG*RKSPIKLAXVDATQEQXLAXSYGVRGYPTLKFFXXXS 361
+A + S + +A VDA ++ L + V+G+PT+K+F S
Sbjct: 65 -GEAYTQSSDVIIAKVDADGDRDLGSRFDVKGFPTIKYFPKGS 106
>SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 1056
Score = 76.6 bits (180), Expect = 1e-14
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Frame = +2
Query: 107 NVLVLSKANFETVITTTXYILVEFYAPWCGHCXSLAPXYGQXSNKAG*RKSPIKLAXVDA 286
+VL L +NF++ + +LVEF+APWCGHC LAP Y + P+ LA VD
Sbjct: 539 DVLDLGDSNFKSGVAGKDIMLVEFFAPWCGHCKRLAPEYETAAEALKKNDPPVPLAKVDC 598
Query: 287 TQE-QXLAXSYGVRGYPTLKFFXXXSLS 367
T+ + YGV GYPTLK F +S
Sbjct: 599 TEAGKDTCSKYGVSGYPTLKIFRNGEMS 626
Score = 54.8 bits (126), Expect = 4e-08
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = +2
Query: 110 VLVLSKANFETVITT-TXYILVEFYAPWCGHCXSLAPXYGQXSNKAG*RKSPIKLAXVDA 286
V V+ NF+ ++ T +L+EFYAPWCGHC SL P Y + K K I +A +DA
Sbjct: 864 VKVVVGENFKEIVNDPTKDVLIEFYAPWCGHCKSLEPKYNELGEKLQDVKD-IVIAKMDA 922
Query: 287 TQEQXLAXSYGVRGYPTLKFFXXXSLSTIXVVV 385
T ++ V+G + + I +++
Sbjct: 923 TAND-APPNFSVQGIIIISIIGIIIIVIIMIII 954
>SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 362
Score = 71.3 bits (167), Expect = 4e-13
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Frame = +2
Query: 104 ENVLVLSKANFET-VITTTXYILVEFYAPWCGHCXSLAPXYGQXSNKAG*RKSPIKLAXV 280
E+V+ L+ NFE V+ + LVEF+APWCGHC LAP + + + + K +K+ +
Sbjct: 79 EDVVELTDTNFEKEVLNSKDLWLVEFFAPWCGHCQRLAPEWAKAATEL---KGKVKVGAL 135
Query: 281 DATQEQXLAXSYGVRGYPTLKFF 349
DAT A Y V+GYPT+K F
Sbjct: 136 DATVHTVTASRYQVQGYPTIKVF 158
>SB_3640| Best HMM Match : Thioredoxin (HMM E-Value=4.3e-33)
Length = 386
Score = 64.9 bits (151), Expect = 4e-11
Identities = 31/80 (38%), Positives = 42/80 (52%)
Frame = +2
Query: 98 TXENVLVLSKANFETVITTTXYILVEFYAPWCGHCXSLAPXYGQXSNKAG*RKSPIKLAX 277
T V+ L F+ + +LV FYAPWCGHC ++ P Y + ++ P LA
Sbjct: 80 TPSEVVHLRDDMFDDFVAKNPSVLVMFYAPWCGHCKAMKPEYVDAAQTLKEQEIPGVLAA 139
Query: 278 VDATQEQXLAXSYGVRGYPT 337
VDAT+E L + V GYPT
Sbjct: 140 VDATKEAALGKRFKVEGYPT 159
Score = 42.7 bits (96), Expect = 2e-04
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 20/91 (21%)
Frame = +2
Query: 119 LSKANFETVITTTXYILVEFYAPWCGHCXSLAP------XYGQXSNKAG----------- 247
LS F++ + ++LV FYAPWCGHC P + + NK
Sbjct: 200 LSDTTFKSFVKKKKHVLVMFYAPWCGHCKKAKPELMSAAKHHKDKNKRALSLRDFDFSND 259
Query: 248 ---*RKSPIKLAXVDATQEQXLAXSYGVRGY 331
R+ I A VD T+E + +GV GY
Sbjct: 260 TLCNRRRLIAYAAVDCTKEMAVCQQFGVEGY 290
>SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41)
Length = 271
Score = 58.0 bits (134), Expect = 4e-09
Identities = 25/80 (31%), Positives = 43/80 (53%)
Frame = +2
Query: 110 VLVLSKANFETVITTTXYILVEFYAPWCGHCXSLAPXYGQXSNKAG*RKSPIKLAXVDAT 289
V+ L+ + + I + +LV ++APWCGHC + P Y + + + LA VD T
Sbjct: 52 VVFLTDESHDEFIKSHENVLVMYFAPWCGHCNEMKPNYYKAAQVLHDEDANCNLAAVDCT 111
Query: 290 QEQXLAXSYGVRGYPTLKFF 349
+ + +A + GYPT+K +
Sbjct: 112 KHKDVAKKVALAGYPTVKLY 131
Score = 55.2 bits (127), Expect = 3e-08
Identities = 25/77 (32%), Positives = 42/77 (54%)
Frame = +2
Query: 119 LSKANFETVITTTXYILVEFYAPWCGHCXSLAPXYGQXSNKAG*RKSPIKLAXVDATQEQ 298
L ++F + T ++LV FYAPWCGHC + P Y + + + + + A +D T+
Sbjct: 152 LDGSDFWGYLNNTEHVLVMFYAPWCGHCKNAKPKYEKAAETFKDQPNRV-FAKLDCTKFG 210
Query: 299 XLAXSYGVRGYPTLKFF 349
+ V GYPTL+++
Sbjct: 211 DVCDKEEVNGYPTLRYY 227
>SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 56.8 bits (131), Expect = 9e-09
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = +2
Query: 119 LSKANFETVITTTXYILVEFYAPWCGHCXSLAPXYGQXSNKAG*RKSPIKLAXVDAT--Q 292
L+ NF+ +I +LV+FYAPWC HC L P +N K + A VD T +
Sbjct: 25 LNAQNFDQMIREKDIMLVDFYAPWCHHCQELLPQLEGAANALA-AKGLFQFAKVDCTDPR 83
Query: 293 EQXLAXSYGVRGYPTLKFF 349
+ L ++ + GYP++K F
Sbjct: 84 SKVLCDNFKIEGYPSVKLF 102
>SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 53.6 bits (123), Expect = 9e-08
Identities = 26/78 (33%), Positives = 39/78 (50%)
Frame = +2
Query: 116 VLSKANFETVITTTXYILVEFYAPWCGHCXSLAPXYGQXSNKAG*RKSPIKLAXVDATQE 295
V SK F V+ + +V+FYAPWCG C AP Y Q + K ++ A V+ Q+
Sbjct: 438 VNSKNFFTDVLASEDAWVVDFYAPWCGPCMRFAPKYEQLAKML---KGKVRAAKVNCEQD 494
Query: 296 QXLAXSYGVRGYPTLKFF 349
L + YPT++ +
Sbjct: 495 YGLCSEANIHSYPTVRLY 512
Score = 49.2 bits (112), Expect = 2e-06
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = +2
Query: 74 LALGXEVXTXENVLVLSKANFETVITT-TXYILVEFYAPWCGHCXSLAPXYGQXSNKAG* 250
+AL + NV L +F + +T+ + V+F+APWC C L P Y + +
Sbjct: 274 IALFAKESVSSNVHALGPEDFPSSVTSPSRPFFVDFFAPWCPPCMRLLPEYRKAARSF-- 331
Query: 251 RKSPIKLAXVDATQEQXLAXSYGVRGYPT 337
P+ VD T L Y +R YPT
Sbjct: 332 VGKPVGFGTVDCTVHSQLCHQYNIRSYPT 360
>SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27)
Length = 472
Score = 52.4 bits (120), Expect = 2e-07
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Frame = +2
Query: 110 VLVLSKANFETVITTTXYILVEFYAPWCGHCXSLAPXYGQXSNK-AG*RKSPIKLAXVDA 286
+L L +NFE + ++LV+FYAPWC HC +AP Y + + + ++LA VD
Sbjct: 136 LLELDDSNFEPAVQKHKFVLVDFYAPWCFHCKKMAPDYKDVAKELLILSHNSVRLAKVDC 195
Query: 287 TQE----QXLAXSYGVRGYPTLKFF 349
+ + Y V+ PT+ F
Sbjct: 196 SANNMATKKTCKKYNVKFLPTIYLF 220
Score = 46.0 bits (104), Expect = 2e-05
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +2
Query: 110 VLVLSKANFETVITTTXYILVEFYAPWCGHCXSLAPXY 223
VL L+ NF I Y+LV+FYAPWC C L+P +
Sbjct: 53 VLNLNDQNFNETIKKNEYVLVDFYAPWCSDCQRLSPLF 90
>SB_20276| Best HMM Match : Thioredoxin (HMM E-Value=9.8e-06)
Length = 70
Score = 52.0 bits (119), Expect = 3e-07
Identities = 23/56 (41%), Positives = 32/56 (57%)
Frame = +2
Query: 107 NVLVLSKANFETVITTTXYILVEFYAPWCGHCXSLAPXYGQXSNKAG*RKSPIKLA 274
+VL L +NF++ + +LVEF+APWCGHC LAP Y + P+ LA
Sbjct: 14 DVLDLGDSNFKSGVAGKDIMLVEFFAPWCGHCKRLAPEYETAAEALKKNDPPVPLA 69
>SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)
Length = 308
Score = 46.4 bits (105), Expect = 1e-05
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = +2
Query: 107 NVLVLS-KANFETVITT--TXYILVEFYAPWCGHCXSLAPXYGQXSNKAG*RKSPIKLAX 277
NV VL + F +T T ++ +F A WCG C S+AP Y S K +++
Sbjct: 8 NVKVLELDSQFTAELTNAGTKLVVADFTASWCGPCKSIAPVYSGLSEKY--KQAVFLKID 65
Query: 278 VDATQEQXLAXSYGVRGYPTLKFF 349
VD QE LA GV PT +FF
Sbjct: 66 VDVCQE--LAAKQGVTAMPTFQFF 87
>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
Length = 456
Score = 45.2 bits (102), Expect = 3e-05
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = +2
Query: 107 NVLVLSKANFETVITT---TXYILVEFYAPWCGHCXSLAPXYGQXSNKAG*RKSPIKLAX 277
NV+V+ +F +V + ++++F A WCG C S+AP + S K +
Sbjct: 9 NVIVVEDDSFFSVEIERAGSRLVVIDFTATWCGPCKSIAPVFTNLSMKF----MDVVFLK 64
Query: 278 VDATQEQXLAXSYGVRGYPTLKFF 349
VD Q Q A S G+R PT F+
Sbjct: 65 VDVDQCQLTAESCGIRAMPTFHFY 88
>SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 41.1 bits (92), Expect = 5e-04
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +2
Query: 110 VLVLSKANFETVITTTXYILVEFYAPWCGHCXSLAPXYGQXS-NKAG*RKSPIKLAXVDA 286
+ L+ +F+ + +LV+FYAPWC C +L P Y + + + A K + A ++
Sbjct: 24 IFELTDQDFDNFLKDKEVMLVDFYAPWCSDCDNLRPKYEKAARDLAKEHKFVMAKALMNT 83
Query: 287 TQEQXLAXSYGVRGYPTL 340
Q GV + TL
Sbjct: 84 NSTQTTCLPMGVHYWRTL 101
>SB_38445| Best HMM Match : ERp29 (HMM E-Value=2.2e-19)
Length = 335
Score = 41.1 bits (92), Expect = 5e-04
Identities = 18/86 (20%), Positives = 41/86 (47%)
Frame = +2
Query: 104 ENVLVLSKANFETVITTTXYILVEFYAPWCGHCXSLAPXYGQXSNKAG*RKSPIKLAXVD 283
+ ++ + N + + + ++ + FYAPW HC + + Q +++ R I + +
Sbjct: 26 KKIVEFTNENVDEYVDGSKFVFIFFYAPWDDHCQRILQIFDQVADEFADR-DDIVVGKSN 84
Query: 284 ATQEQXLAXSYGVRGYPTLKFFXXXS 361
A ++ +A Y + YP ++F S
Sbjct: 85 AYEDVKIATRYWIDRYPMFRYFIKGS 110
>SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21)
Length = 186
Score = 37.5 bits (83), Expect = 0.006
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +2
Query: 110 VLVLSKANFETVITTTXYILVEFYAPWCGHCXSLAPXY 223
V +L+K F+ I + V+FYAPWC HC LAP +
Sbjct: 92 VHILTKNTFDKHIELGLHF-VKFYAPWCIHCIKLAPIW 128
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 254 KSPIKLAXVDATQEQXLAXSYGVRGYPTLKFF 349
K + +A VD T + L +R YPT+K +
Sbjct: 16 KRDLTIAKVDCTSDVNLCVKQNIRAYPTMKLY 47
>SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19)
Length = 975
Score = 35.9 bits (79), Expect = 0.019
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +2
Query: 137 ETVITTTXYILVEFYAPWCGHCXSLAPXYGQXSNKAG*RKSPIKLAXVDATQEQXLAXSY 316
+ VI +L+ FY PWCG C + AP + + S + + +DA Q L +
Sbjct: 529 DIVINNDQDVLLVFYTPWCGMCINFAPVLLAVA-RFFQDISQVSVTRIDADQND-LPWNL 586
Query: 317 GVRGYPTLKFF 349
V YP++ F
Sbjct: 587 TVSSYPSIILF 597
>SB_218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 35.5 bits (78), Expect = 0.025
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2
Query: 125 KANFETVITTTX--YILVEFYAPWCGHCXSLAPXY 223
+A F +VI T ++++FYA WCG C + P +
Sbjct: 18 RAEFNSVINNTKDKLVVIDFYAEWCGPCRQIKPKF 52
>SB_13271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 39
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 107 NVLVLSKANFETVITTTXYILVEFYA 184
NV++L + NF+ VI + V FYA
Sbjct: 12 NVVILDEGNFDKVIAENKLVFVNFYA 37
>SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05)
Length = 215
Score = 27.5 bits (58), Expect = 6.5
Identities = 9/29 (31%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +2
Query: 131 NFETVITTTXYIL--VEFYAPWCGHCXSL 211
+F+ +++++ +L V F+APW HC +
Sbjct: 11 DFDRILSSSSNVLAVVHFFAPWAPHCNQM 39
>SB_44457| Best HMM Match : Thioredoxin (HMM E-Value=2.2e-07)
Length = 438
Score = 27.1 bits (57), Expect = 8.6
Identities = 8/36 (22%), Positives = 17/36 (47%)
Frame = +2
Query: 134 FETVITTTXYILVEFYAPWCGHCXSLAPXYGQXSNK 241
F+ + ++F A WCG C + P + + + +
Sbjct: 4 FDKFLKDNEVAAIDFTATWCGPCRMIGPKFEEMAKE 39
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,365,355
Number of Sequences: 59808
Number of extensions: 135485
Number of successful extensions: 193
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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