Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30864.Seq
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148... 60 2e-09
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974... 41 4e-05
03_05_0859 - 28329837-28329919,28330062-28330131,28330498-283305... 38 0.008
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 35 0.054
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946... 33 0.16
05_02_0083 + 6450694-6450766,6451391-6451560,6451633-6451704,645... 33 0.29
04_04_0639 + 26883810-26883821,26884131-26884307,26885276-268853... 33 0.29
12_02_1010 + 25269721-25269787,25270162-25270308,25270407-252707... 32 0.50
07_01_0101 - 752935-753223,753311-753408,753674-753764,753844-75... 31 1.2
06_01_0449 - 3176135-3176329,3176531-3177289,3177420-3177905,317... 31 1.2
03_05_0688 + 26762668-26762893,26763027-26763101,26763865-267640... 31 1.2
10_08_0435 + 17905728-17905901,17906608-17906931,17907205-179073... 29 4.7
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502... 28 6.2
12_02_1011 + 25276077-25276143,25276575-25276721,25276855-252769... 28 8.2
>02_01_0003 +
13079-13610,14005-14312,14364-14549,14620-14707,
14807-14887,14980-15044,15357-15497,15578-15694,
15995-16237,16326-16383,18127-18224
Length = 638
Score = 60.1 bits (139), Expect = 2e-09
Identities = 35/101 (34%), Positives = 50/101 (49%)
Frame = +2
Query: 263 ESDVELDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQKYDEAINL 442
ESD+EL+ + ++ D D Q MGDP+ AM A SE K +EAI+
Sbjct: 322 ESDLELEGD-IVESDHQDPPQKMGDPSIDVTEENRDASQEAKSKAMEAMSEGKLEEAIDH 380
Query: 443 YTAAIQLNPQSALLFAKRGQVY*N*TNQMACIKDCTHGLRV 565
T AI LNP SA+++ R V+ +A I+D L +
Sbjct: 381 LTKAILLNPLSAIMYGTRASVFIKMKKPVAAIRDANAALEI 421
Score = 56.8 bits (131), Expect = 2e-08
Identities = 25/46 (54%), Positives = 32/46 (69%)
Frame = +3
Query: 39 NAEQLDQLKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLPTATF 176
+A ++ +L++FVE CK P LL P LAFF+DYL SLG LP A F
Sbjct: 227 DASRVGELRTFVEACKKDPSLLADPNLAFFRDYLESLGAHLPAAAF 272
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/48 (50%), Positives = 33/48 (68%)
Frame = +3
Query: 537 LKTAHMALELNCDSAXPYKFRGRAYRLLGKFEESSHGSLWNP*KIDYD 680
++ A+ ALE+N DSA YK RG AY +LGK+EE++H L +DYD
Sbjct: 412 IRDANAALEINPDSAKGYKTRGMAYAMLGKWEEAAH-DLHTASNMDYD 458
>09_04_0038 -
13996505-13996836,13997047-13997077,13997307-13997420,
13997546-13997686,13997787-13997851,13997943-13998039,
13998096-13998257,13998360-13998473,14001263-14001311,
14001967-14002047,14003504-14003561,14003671-14004031,
14004129-14004213,14004320-14004591,14004712-14004914,
14005419-14005494
Length = 746
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/58 (41%), Positives = 36/58 (62%)
Frame = +3
Query: 507 IKTKQTKWHVLKTAHMALELNCDSAXPYKFRGRAYRLLGKFEESSHGSLWNP*KIDYD 680
+K+K+ ++ A AL++N DSA YK RG A +LGK+EE++ L K+DYD
Sbjct: 524 VKSKKPN-AAIRDADAALKINPDSAKGYKSRGMAKAMLGKWEEAAQ-DLRMAAKLDYD 579
Score = 35.9 bits (79), Expect(2) = 4e-05
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +2
Query: 419 KYDEAINLYTAAIQLNPQSALLFAKRGQVY*N*TNQMACIKDCTHGLRV 565
K DEAI T AI LNP SA+ +A R ++ A I+D L++
Sbjct: 494 KLDEAIEHLTEAIVLNPTSAIAYATRAVIFVKSKKPNAAIRDADAALKI 542
Score = 29.1 bits (62), Expect(2) = 4e-05
Identities = 20/53 (37%), Positives = 24/53 (45%)
Frame = +2
Query: 263 ESDVELDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQK 421
ESD+EL+ E V PD D Q MGDP+ + AFSE K
Sbjct: 414 ESDIELEGEAV-EPDN-DPPQKMGDPSVEVSDEKRDQAQLCKNKGVDAFSEGK 464
>03_05_0859 -
28329837-28329919,28330062-28330131,28330498-28330549,
28330671-28330798,28331283-28331483,28332183-28332317,
28333116-28333275,28333824-28334019,28334070-28334252,
28334382-28334507,28335090-28335214,28335389-28335541,
28337267-28337472
Length = 605
Score = 37.9 bits (84), Expect = 0.008
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +2
Query: 404 AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY*N*TNQMACIKDCTHGLRVE 568
AF E+++ +AIN YT AI+LN + A ++ R + + DCT + ++
Sbjct: 499 AFKEKQWQKAINFYTEAIKLNNKVATYYSNRAAAFLELASYRQAEADCTSAIDID 553
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 35.1 bits (77), Expect = 0.054
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 407 FSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY 508
F EQKY +A+ YT AI+ NP+ +++ R Y
Sbjct: 424 FKEQKYPDAVKHYTEAIRRNPKDPKVYSNRAACY 457
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 404 AFSEQKYDEAINLYTAAIQLNPQSALLFAKR 496
AFS +Y+EA +T AI L P + +L++ R
Sbjct: 12 AFSAGRYEEAARHFTDAIALAPGNHVLYSNR 42
>01_01_1190 +
9463973-9465732,9466210-9466440,9467664-9467793,
9468723-9468888,9469528-9469859,9470284-9470513,
9471535-9471613,9471689-9471865
Length = 1034
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +2
Query: 401 RAFSEQKYDEAINLYTAAIQLNPQ----SALLFAKRGQVY*N*TNQMACIKDCTHGLRVE 568
+AF KY EA+ YTAA+ N + SA+ FA R Y + I DC+ + ++
Sbjct: 809 KAFQAGKYSEAVEHYTAALLSNTESPRFSAICFANRAAAYQAMGQILDAIADCSLAIALD 868
>05_02_0083 +
6450694-6450766,6451391-6451560,6451633-6451704,
6451893-6452043,6452709-6452817,6452906-6453023,
6453214-6453361,6453520-6453768,6454209-6454334,
6454474-6454574,6454728-6454802,6455160-6455219
Length = 483
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +2
Query: 404 AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY*N*TNQMACIKDCTHGLRVE 568
AF K+ AI LY+ AI+LN +A+ +A R + + ++D + + ++
Sbjct: 22 AFKANKFSLAIELYSQAIELNSSNAVYWANRAFAHTKLEEYGSAVQDASKAIEID 76
>04_04_0639 +
26883810-26883821,26884131-26884307,26885276-26885339,
26886614-26887734,26888193-26888481,26888528-26888658,
26888910-26889133,26889220-26889286,26889744-26889803,
26889896-26889979,26890290-26890301
Length = 746
Score = 32.7 bits (71), Expect = 0.29
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 407 FSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY 508
F +QKY EA+ Y+ A++ NP+ +++ R Y
Sbjct: 574 FKQQKYPEAVKHYSEALRRNPKDPRVYSNRAACY 607
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 395 AMRAFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY*N*TNQMACIKDC 547
A A ++ ++ AI YT A++L+ + R VY CI DC
Sbjct: 416 AGNAAYKKDFETAIQHYTKAMELDDEDVSYLTNRAAVYLEMGKYDECINDC 466
>12_02_1010 +
25269721-25269787,25270162-25270308,25270407-25270783,
25271273-25271407,25272059-25272211,25272761-25272862,
25273380-25273550,25273659-25273738,25273860-25273917
Length = 429
Score = 31.9 bits (69), Expect = 0.50
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +2
Query: 395 AMRAFSEQKYDEAINLYTAAIQLNPQSALLFAKR 496
A AF+E +Y AI YT A++ P A LFA R
Sbjct: 309 AKEAFAEGEYITAIYFYTKALEKAPLDATLFANR 342
>07_01_0101 -
752935-753223,753311-753408,753674-753764,753844-753882,
754019-754110,754535-754634,754742-754828,754949-755250,
756036-756242,756319-756405,756978-757058,757257-757365,
758037-758093,758188-758258,758414-758521,758874-758974,
759111-759177,759434-759535,759618-759662,759916-760511,
761956-762065,762165-762280
Length = 984
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +3
Query: 486 LLNGDRCIKTKQTKWHVLKTAHMALELNCDSAXPYKFRGRAYRLLGKFEES 638
L N C + HV+K ALEL+ Y +G+A LGK EE+
Sbjct: 38 LCNRAFCYSQLELHKHVVKDCDRALELDPALLQAYVLKGKALSALGKREEA 88
>06_01_0449 -
3176135-3176329,3176531-3177289,3177420-3177905,
3178302-3178421,3178637-3178703,3178784-3179007,
3179149-3179234,3179936-3180509
Length = 836
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 407 FSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY 508
F +++Y EA YT A++ NP+ +F+ R Q +
Sbjct: 196 FKQKRYQEAAMHYTEAMKKNPKDPRVFSNRAQCH 229
>03_05_0688 +
26762668-26762893,26763027-26763101,26763865-26764032,
26764983-26765114,26765538-26765677,26765840-26765908,
26766325-26766435,26766854-26766973,26768223-26768324,
26769608-26769778,26769865-26769944,26770119-26770182
Length = 485
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 401 RAFSEQKYDEAINLYTAAIQLNPQSALLFAKR 496
+AF E Y AI YT A++L+P A L++ R
Sbjct: 365 KAFEEGDYAGAIIFYTEAMKLDPADATLYSNR 396
>10_08_0435 +
17905728-17905901,17906608-17906931,17907205-17907321,
17908418-17908597,17909064-17909190,17909327-17909440,
17909794-17909909
Length = 383
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 419 KYDEAINLYTAAIQLNPQSALLFAKRGQVY 508
KYDE I T A++LNP +RG+ +
Sbjct: 267 KYDETIKECTKALELNPSYLKALLRRGEAH 296
>07_03_1575 -
27848977-27849095,27849254-27849302,27850270-27850287,
27850798-27851786,27852119-27852733,27852893-27852921,
27853990-27854453,27854530-27854654,27854743-27855025,
27855112-27856102,27856965-27857576,27857666-27858630
Length = 1752
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 154 TPRDIR*SLKNANCGWCNSC 95
T + + L+ CGWCNSC
Sbjct: 756 TDQKLSVELRKEKCGWCNSC 775
>12_02_1011 +
25276077-25276143,25276575-25276721,25276855-25276986,
25277130-25277269,25277481-25277567,25277776-25277904,
25278493-25278645,25278891-25278992,25279507-25279677,
25279773-25279852,25280491-25280524
Length = 413
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 404 AFSEQKYDEAINLYTAAIQLNPQSALLFAKR 496
AF++ Y AI YT A+ +P A LFA R
Sbjct: 304 AFAKGDYLTAIYFYTLAMDKSPLDATLFANR 334
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,018,312
Number of Sequences: 37544
Number of extensions: 310932
Number of successful extensions: 644
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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