Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30864.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)                 44   1e-04
SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.13 
SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)                        28   8.4  

>SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)
          Length = 559

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 34/110 (30%), Positives = 45/110 (40%), Gaps = 7/110 (6%)
 Frame = +2

Query: 257 EPESD---VELDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQ--- 418
           +PES+    ++D  GVI PD  DE   MGD +                            
Sbjct: 3   KPESEKGVFDIDQTGVIEPD-VDEPVPMGDDSIESPLASLVMTFWLSVTGREKSGGSDTL 61

Query: 419 -KYDEAINLYTAAIQLNPQSALLFAKRGQVY*N*TNQMACIKDCTHGLRV 565
              +EAI L+T AI  NP SA LFAKR   +       A I+DC    ++
Sbjct: 62  GNLEEAIKLFTDAIMKNPHSAPLFAKRASCFIRMKKPNAAIRDCDKAAQI 111



 Score = 35.9 bits (79), Expect = 0.032
 Identities = 18/48 (37%), Positives = 29/48 (60%)
 Frame = +3

Query: 537 LKTAHMALELNCDSAXPYKFRGRAYRLLGKFEESSHGSLWNP*KIDYD 680
           ++    A ++N DSA  YK+RGRA+  LG +E++    L    K+D+D
Sbjct: 102 IRDCDKAAQINPDSAQIYKWRGRAHEFLGHWEKADK-DLAQALKLDFD 148


>SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 404 AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQV 505
           AF +QKY+EA+ LYT A+  +  +   +  R Q+
Sbjct: 130 AFKQQKYEEAVKLYTQALNQDRTNTAFYTNRAQL 163


>SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/54 (24%), Positives = 24/54 (44%)
 Frame = +2

Query: 404 AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY*N*TNQMACIKDCTHGLRV 565
           A+ ++ +D A   +  A +LNP +   +      +    N   CIK+C   + V
Sbjct: 240 AYKKKDFDTAHKHFNNAKELNPDNMTFYTNNAAAFFEEGNYEECIKECLEAVEV 293


>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1769

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +2

Query: 404  AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY*N*TNQMACIKDCTHGLRVE 568
            A   +++ EA++ YT  I+L      LF+ R   +         + DC   L++E
Sbjct: 874  AVKREEFQEALDWYTKGIELTKTDHRLFSNRALCHLKLNKPKEALADCESCLKLE 928


>SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 1981

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 404 AFSEQKYDEAINLYTAAIQLNPQSALLFAKR 496
           A S+  + +A+ LY+ AI+L+P + +L+  R
Sbjct: 32  ACSKGDFQKAVELYSEAIKLDPNNHVLYGNR 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,040,136
Number of Sequences: 59808
Number of extensions: 372925
Number of successful extensions: 843
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)