Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30864.Seq
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to te... 65 4e-11
At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containi... 58 4e-09
At2g42810.1 68415.m05300 serine/threonine protein phosphatase, p... 39 0.004
At4g23570.2 68417.m03396 phosphatase-related low similarity to p... 38 0.006
At4g23570.1 68417.m03395 phosphatase-related low similarity to p... 38 0.006
At4g11260.1 68417.m01822 phosphatase-related low similarity to p... 38 0.008
At3g17970.1 68416.m02286 chloroplast outer membrane translocon s... 35 0.045
At1g56440.1 68414.m06491 serine/threonine protein phosphatase-re... 35 0.045
At1g12270.1 68414.m01419 stress-inducible protein, putative simi... 35 0.060
At1g62740.1 68414.m07081 stress-inducible protein, putative simi... 34 0.079
At4g12400.1 68417.m01960 stress-inducible protein, putative simi... 34 0.10
At4g08320.1 68417.m01373 tetratricopeptide repeat (TPR)-containi... 34 0.10
At5g09420.1 68418.m01091 chloroplast outer membrane translocon s... 32 0.32
At1g68185.1 68414.m07789 ubiquitin-related similar to ubiquitin-... 31 0.97
At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containi... 29 3.0
At1g01740.1 68414.m00093 protein kinase family protein low simil... 28 5.2
At1g04190.1 68414.m00409 tetratricopeptide repeat (TPR)-containi... 28 6.8
At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containi... 27 9.0
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta... 27 9.0
>At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to
tetratricoredoxin [Arabidopsis thaliana] GI:18041544;
similar to SP|Q42443 Thioredoxin H-type (TRX-H) (Phloem
sap 13 kDa protein-1) {Oryza sativa}; contains Pfam
profile: PF00085 Thioredoxin
Length = 380
Score = 65.3 bits (152), Expect = 4e-11
Identities = 38/100 (38%), Positives = 49/100 (49%)
Frame = +2
Query: 263 ESDVELDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQKYDEAINL 442
ESDVELD V+ PD + Q MGDP AM A S+ ++DEAI
Sbjct: 76 ESDVELDNSDVVEPDN-EPPQPMGDPTAEVTDENRDDAQSEKSKAMEAISDGRFDEAIEH 134
Query: 443 YTAAIQLNPQSALLFAKRGQVY*N*TNQMACIKDCTHGLR 562
T A+ LNP SA+L+A R V+ A I+D L+
Sbjct: 135 LTKAVMLNPTSAILYATRASVFLKVKKPNAAIRDANVALQ 174
Score = 48.4 bits (110), Expect = 5e-06
Identities = 22/51 (43%), Positives = 31/51 (60%)
Frame = +3
Query: 39 NAEQLDQLKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLPTATFGAKDF 191
+A Q+ +L+ FVE K P +LH P L FFK+YL SLG +P +D+
Sbjct: 3 DAIQVAELRRFVEQLKLNPSILHDPSLVFFKEYLRSLGAQVPKIEKTERDY 53
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/48 (43%), Positives = 32/48 (66%)
Frame = +3
Query: 537 LKTAHMALELNCDSAXPYKFRGRAYRLLGKFEESSHGSLWNP*KIDYD 680
++ A++AL+ N DSA YK RG A +LG++EE++ L K+DYD
Sbjct: 166 IRDANVALQFNSDSAKGYKSRGMAKAMLGQWEEAA-ADLHVASKLDYD 212
>At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containing
protein similar to Hsc70-interacting protein (Hip) from
{Homo sapiens} SP|P50502, {Rattus norvegicus} SP|P50503;
contains Pfam profile PF00515: tetratricopeptide repeat
(TPR) domain
Length = 441
Score = 58.4 bits (135), Expect = 4e-09
Identities = 37/101 (36%), Positives = 47/101 (46%)
Frame = +2
Query: 263 ESDVELDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQKYDEAINL 442
ESDVEL+ + + PD D Q MGD + AM A SE +DEAI
Sbjct: 88 ESDVELEGD-TVEPDN-DPPQKMGDSSVEVTDENREAAQEAKGKAMEALSEGNFDEAIEH 145
Query: 443 YTAAIQLNPQSALLFAKRGQVY*N*TNQMACIKDCTHGLRV 565
T AI LNP SA+++ R VY A I+D L +
Sbjct: 146 LTRAITLNPTSAIMYGNRASVYIKLKKPNAAIRDANAALEI 186
Score = 51.2 bits (117), Expect = 6e-07
Identities = 21/43 (48%), Positives = 31/43 (72%)
Frame = +3
Query: 39 NAEQLDQLKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLPT 167
++ +L +LK F++ CK+ P LL P L+FF+DYL SLG +PT
Sbjct: 2 DSTKLSELKVFIDQCKSDPSLLTTPSLSFFRDYLESLGAKIPT 44
Score = 36.7 bits (81), Expect = 0.015
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +3
Query: 537 LKTAHMALELNCDSAXPYKFRGRAYRLLGKFEESSHGSLWNP*KIDYD 680
++ A+ ALE+N DSA YK RG A +LG++ E++ L IDYD
Sbjct: 177 IRDANAALEINPDSAKGYKSRGMARAMLGEWAEAAK-DLHLASTIDYD 223
>At2g42810.1 68415.m05300 serine/threonine protein phosphatase,
putative similar to SP|P53042 Serine/threonine protein
phosphatase 5 (EC 3.1.3.16) (PP5) (Protein phosphatase
T) (PPT) {Rattus norvegicus}; contains Pfam profiles
PF00149: Ser/Thr protein phosphatase, PF00515: TPR
Domain
Length = 484
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +2
Query: 395 AMRAFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY*N*TNQMACIKDCTHGLRVE 568
A AF KY AI+LYT AI+LN +A+ +A R + + I+D + + V+
Sbjct: 20 ANEAFKGHKYSSAIDLYTKAIELNSNNAVYWANRAFAHTKLEEYGSAIQDASKAIEVD 77
>At4g23570.2 68417.m03396 phosphatase-related low similarity to
phosphoprotein phosphatase [Mus musculus] GI:567040;
contains Pfam profiles PF00515: TPR Domain, PF05002: SGS
domain, PF04969: CS domain
Length = 350
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +2
Query: 395 AMRAFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY 508
A AF + +D A++LY+ AI L+P A FA R Q Y
Sbjct: 9 AKEAFVDDDFDVAVDLYSKAIDLDPNCAEFFADRAQAY 46
>At4g23570.1 68417.m03395 phosphatase-related low similarity to
phosphoprotein phosphatase [Mus musculus] GI:567040;
contains Pfam profiles PF00515: TPR Domain, PF05002: SGS
domain, PF04969: CS domain
Length = 350
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +2
Query: 395 AMRAFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY 508
A AF + +D A++LY+ AI L+P A FA R Q Y
Sbjct: 9 AKEAFVDDDFDVAVDLYSKAIDLDPNCAEFFADRAQAY 46
>At4g11260.1 68417.m01822 phosphatase-related low similarity to
protein phosphatase T [Saccharomyces cerevisiae]
GI:897806; contains Pfam profiles PF00515: TPR Domain,
PF05002: SGS domain, PF04969: CS domain
Length = 358
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +2
Query: 395 AMRAFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY*N*TNQMACIKDCTHGLRVE 568
A AF + +D A++LY+ AI L+P A FA R Q N + D + +E
Sbjct: 9 AKEAFLDDDFDVAVDLYSKAIDLDPNCAAFFADRAQANIKIDNFTEAVVDANKAIELE 66
>At3g17970.1 68416.m02286 chloroplast outer membrane translocon
subunit, putative similar to Toc64 [Pisum sativum]
GI:7453538; contains Pfam profile PF00515 TPR Domain
Length = 589
Score = 35.1 bits (77), Expect = 0.045
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = +2
Query: 401 RAFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY*N*TNQMACIKDCTHGLRVE 568
+AF E+ + +AI LY+ AI+L+ +A ++ R Y + +DCT + ++
Sbjct: 483 QAFKEKLWQKAIGLYSEAIKLSDNNATYYSNRAAAYLELGGFLQAEEDCTKAITLD 538
>At1g56440.1 68414.m06491 serine/threonine protein
phosphatase-related similar to SP|Q60676
Serine/threonine protein phosphatase 5 (EC 3.1.3.16)
(PP5) (Protein phosphatase T) (PPT) Mus musculus,
Tetratricopeptide Repeats Of Protein Phosphatase 5 [Homo
sapiens] GI:3212250; contains Pfam profile: PF00515: TPR
Domain
Length = 476
Score = 35.1 bits (77), Expect = 0.045
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +2
Query: 407 FSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY*N*TNQMACIKDCTHGLRVE 568
F ++K++EAI+ Y+ +I L+P +A+ +A R Y DCT L ++
Sbjct: 95 FKQKKFNEAIDCYSRSIALSP-NAVTYANRAMAYLKIKRYREAEVDCTEALNLD 147
>At1g12270.1 68414.m01419 stress-inducible protein, putative similar
to sti (stress inducible protein) [Glycine max]
GI:872116; contains Pfam profile PF00515 TPR Domain
Length = 572
Score = 34.7 bits (76), Expect = 0.060
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +2
Query: 407 FSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY 508
F EQKY EAI YT AI+ NP ++ R Y
Sbjct: 394 FKEQKYPEAIKHYTEAIKRNPNDHKAYSNRAASY 427
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 404 AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY*N*TNQMACIKDC 547
A+ ++ ++ AI Y+ AI+++ + R VY CI+DC
Sbjct: 254 AYKKKDFETAIQHYSTAIEIDDEDISYLTNRAAVYLEMGKYNECIEDC 301
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 404 AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY 508
AFS + AIN +T AI L P + +LF+ R +
Sbjct: 12 AFSSGDFTTAINHFTEAIALAPTNHVLFSNRSAAH 46
>At1g62740.1 68414.m07081 stress-inducible protein, putative similar
to sti (stress inducible protein) [Glycine max]
GI:872116; contains Pfam profile PF00515 TPR Domain
Length = 571
Score = 34.3 bits (75), Expect = 0.079
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 407 FSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY 508
F EQKY +A+ YT AI+ NP+ ++ R Y
Sbjct: 393 FKEQKYPDAVRHYTEAIKRNPKDPRAYSNRAACY 426
Score = 30.7 bits (66), Expect = 0.97
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 404 AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY 508
AFS ++ A+N +T AI L P + +LF+ R +
Sbjct: 12 AFSSGDFNSAVNHFTDAINLTPTNHVLFSNRSAAH 46
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +2
Query: 404 AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY*N*TNQMACIKDC 547
A+ ++ ++ AI Y+ A++++ + R V+ CIKDC
Sbjct: 253 AYKKKDFETAIQHYSTAMEIDDEDISYITNRAAVHLEMGKYDECIKDC 300
>At4g12400.1 68417.m01960 stress-inducible protein, putative similar
to sti (stress inducible protein) [Glycine max]
GI:872116; contains Pfam profile PF00515 TPR Domain
Length = 530
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 407 FSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY 508
F EQKY EA+ Y+ AI+ NP ++ R Y
Sbjct: 380 FKEQKYPEAVKHYSEAIKRNPNDVRAYSNRAACY 413
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 404 AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY 508
AFS Y AI +T AI L+P + +L++ R Y
Sbjct: 12 AFSSGDYATAITHFTEAINLSPTNHILYSNRSASY 46
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 404 AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY*N*TNQMACIKDC 547
A+ ++ + A+ YT A++L+ + R VY CI+DC
Sbjct: 240 AYKKKDFGRAVEHYTKAMELDDEDISYLTNRAAVYLEMGKYEECIEDC 287
>At4g08320.1 68417.m01373 tetratricopeptide repeat (TPR)-containing
protein glutamine-rich tetratricopeptide repeat (TPR)
containing protein (SGT) - Rattus
norvegicus,PID:e1285298 (SP|O70593); contains Pfam
profile PF00515 TPR Domain
Length = 426
Score = 33.9 bits (74), Expect = 0.10
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +2
Query: 401 RAFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY*N*TNQMACIKDCTHGLRVE 568
+A Y EA+ LY+ AI L ++A+ + R Y IKDC + ++
Sbjct: 184 KAMQSNLYLEAVELYSFAIALTDKNAVFYCNRAAAYTQINMCSEAIKDCLKSIEID 239
>At5g09420.1 68418.m01091 chloroplast outer membrane translocon
subunit, putative similar to component of chloroplast
outer membrane translocon Toc64 [Pisum sativum]
GI:7453538; contains Pfam profiles PF01425: Amidase,
PF00515: TPR Domain
Length = 603
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = +2
Query: 404 AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY*N*TNQMACIKDCTHGLRVE 568
A+ +++++A+N YT AI+LN +A + R + +DCT + ++
Sbjct: 498 AYKGKQWNKAVNFYTEAIKLNGANATYYCNRAAAFLELCCFQQAEQDCTKAMLID 552
>At1g68185.1 68414.m07789 ubiquitin-related similar to
ubiquitin-like protein smt3/pmt3 SP:O13351 from [Fission
yeast]
Length = 215
Score = 30.7 bits (66), Expect = 0.97
Identities = 16/74 (21%), Positives = 31/74 (41%)
Frame = +2
Query: 254 KEPESDVELDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQKYDEA 433
+E E + ++E P +Q +P +R F+++K++
Sbjct: 108 QEVEESAKREVEESRNPSSETAAQLPSEPTNDRAKIVITIQDKDGQKTLRVFADEKFERV 167
Query: 434 INLYTAAIQLNPQS 475
I LYT +L+PQ+
Sbjct: 168 IKLYTDKAKLDPQN 181
>At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 798
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Frame = +2
Query: 407 FSEQKYDEAINLYTAAIQLNPQSAL---------LFAKRGQVY*N*TNQMACIKDCTHGL 559
F + +DEA+ LY+ A+++ P A+ LF R V N ++DC L
Sbjct: 74 FRSRDFDEALRLYSKALRVAPLDAIDGDKSLLASLFLNRANVLHNLGLLKESLRDCHRAL 133
Query: 560 RVE 568
R++
Sbjct: 134 RID 136
>At1g01740.1 68414.m00093 protein kinase family protein low
similarity to protein kinase [Arabidopsis thaliana]
GI:2852449; contains Pfam profile: PF00069 Protein
kinase domain
Length = 483
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 404 AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY 508
AF + + EAI YT + L SA + +R Q Y
Sbjct: 385 AFRRKDFSEAIEFYTQFLDLGMISATVLVRRSQSY 419
>At1g04190.1 68414.m00409 tetratricopeptide repeat (TPR)-containing
protein low similarity to protein antigen LmSTI1
[Leishmania major] GI:1698880; contains Pfam profile
PF00515 TPR Domain; EST gb|Z47802 and gb|Z48402 come
from this gene
Length = 328
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 407 FSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY 508
F + +A LYT AI+L+P +A L++ R +
Sbjct: 26 FKAGNFLKAAALYTQAIKLDPSNATLYSNRAAAF 59
>At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 554
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 474 VLCCLLNGDRC-IKTKQTKWHVLKTAHMALELNCDSAXPYKFRGRAYRLLGKFEES 638
+L C LN C +KT Q + +K L + + RG+AYR LG FE++
Sbjct: 145 LLACSLNLMSCYLKTNQHE-ECIKEGSEVLGYDARNVKALYRRGQAYRDLGLFEDA 199
>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-containing
protein similarity to TETRATRICOPEPTIDE REPEAT PROTEIN 2
, human, SWISSPROT:TTC2_HUMAN; contains Pfam profiles
PF00226: DnaJ domain, PF00515: TPR Domain
Length = 1165
Score = 27.5 bits (58), Expect = 9.0
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = +2
Query: 404 AFSEQKYDEAINLYTAAIQLN----PQSALLFAKRGQVY*N*TNQMACIKDCTHGLRVEL 571
AF ++ EA+ YTAA+ N P +A+ F R Y I DC+ L + L
Sbjct: 889 AFQSGRHTEAVEHYTAALACNVESRPFTAVCFCNRAAAYKALGQFSDAIADCS--LAIAL 946
Query: 572 *QRXALQIPR 601
Q + I R
Sbjct: 947 DQNYSKAISR 956
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,019,466
Number of Sequences: 28952
Number of extensions: 260559
Number of successful extensions: 636
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -