Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30863.Seq
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...    84   1e-17
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    27   1.2  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    27   1.6  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   2.8  
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo...    25   6.5  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    25   6.5  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    24   8.6  

>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 83.8 bits (198), Expect = 1e-17
 Identities = 36/57 (63%), Positives = 47/57 (82%)
 Frame = +2

Query: 86  RIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSR 256
           ++VTR+YT+++HKRL+GV FKKRAPRAIKEI  FA+K M T ++RVD  LNK +W R
Sbjct: 11  QVVTRDYTIHMHKRLYGVSFKKRAPRAIKEIVAFAQKHMQTKEVRVDPSLNKEVWKR 67



 Score = 25.8 bits (54), Expect = 2.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 256 GVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIK 375
           G+RNVP           +D++D A  L+T V  V VA+ K
Sbjct: 68  GIRNVPHRLRLRLSRKRSDEDDKA--LYTYVQAVDVANPK 105


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 244 EFV*ASVYSNVRSSHLFFSELSDFFDCSWGTLFKSNTMKSF 122
           E V  S+Y N R  +L ++       CSW +  +S+T  S+
Sbjct: 68  EAVRDSIYQNKRGMYLAYAFGIAILACSWASAIQSSTTYSY 108


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 230 RLNKFLWSRESEMFPSVSV*GFHEDVMMMKIPHISY 337
           +L  F WS      PS  +  + +D  + KIP+I Y
Sbjct: 132 KLTAFAWSVYDGRLPSSELSSYQKDRALRKIPNILY 167


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 419 GVYSWLASTFSVCKPLID 366
           GV  WLAST+S C  +++
Sbjct: 464 GVVCWLASTYSFCDGIVN 481


>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -2

Query: 267 ISDSLDQRNLFKRVSTRMSGVPICFSANFRISLIALGARFLN 142
           ++  +DQ  L  R+  R SG  +C+S  F   L      + N
Sbjct: 22  LAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRN 63


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -1

Query: 322 NLHHHYVFVKASHGHGREHF*LPR-PKE 242
           NLH H++F +  H        LP+ PKE
Sbjct: 255 NLHSHFLFFEFQHRFSGRRMKLPKFPKE 282


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 364 QQARKSLV*ITYVRNLHHHYVFVKASH 284
           ++A+KSL    + R  + HYVFV   H
Sbjct: 452 EEAKKSLWSKRFSRFYYGHYVFVNTCH 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,737,742
Number of Sequences: 5004
Number of extensions: 32700
Number of successful extensions: 65
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)