BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= psV30863.Seq (427 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 06_02_0140 + 12255418-12255512,12257514-12257793 95 2e-20 08_02_1181 - 24985963-24986242,24987109-24987197 94 4e-20 02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649 79 1e-15 01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602... 29 1.6 >06_02_0140 + 12255418-12255512,12257514-12257793 Length = 124 Score = 95.5 bits (227), Expect = 2e-20 Identities = 41/55 (74%), Positives = 48/55 (87%) Frame = +2 Query: 89 IVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWS 253 +VTREYT+NLHKRLHG FKK+AP AIKEIRKFA+K MGT D+RVD +LNK +WS Sbjct: 16 VVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVKLNKHIWS 70 Score = 35.5 bits (78), Expect = 0.018 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%) Frame = +1 Query: 256 GVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 399 G+R+VP ND+ED+ +L++LVT VP +KGL T+ V+ Sbjct: 72 GIRSVPRRVRVRIARRRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKLVE 121 >08_02_1181 - 24985963-24986242,24987109-24987197 Length = 122 Score = 94.3 bits (224), Expect = 4e-20 Identities = 40/57 (70%), Positives = 48/57 (84%) Frame = +2 Query: 83 KRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWS 253 + +VTREYT+NLHKRLH FKK+AP AIKEIRKFA+K MGT D+RVD +LNK +WS Sbjct: 12 EEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKLNKHIWS 68 Score = 37.1 bits (82), Expect = 0.006 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%) Frame = +1 Query: 256 GVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 399 G+R+VP ND+ED+ +L++LVT VP +KGL T+ VD Sbjct: 70 GIRSVPRRVRVRIARKRNDEEDAKEELYSLVTVAEVPPEGLKGLGTKVVD 119 >02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649 Length = 139 Score = 79.0 bits (186), Expect = 1e-15 Identities = 44/89 (49%), Positives = 54/89 (60%), Gaps = 18/89 (20%) Frame = +2 Query: 62 KKRQISHKR--IVTREYTVNLHKRLHGV----------------GFKKRAPRAIKEIRKF 187 KKR ++ +VTREYT+NLHKRLHG FKK+AP AIKEIRKF Sbjct: 4 KKRGAGTRKDEVVTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKF 63 Query: 188 AEKQMGTPDIRVDTRLNKFLWSRESEMFP 274 A+K MGT DIR+D +LNK +W+ P Sbjct: 64 AQKAMGTTDIRIDVKLNKAIWTNGIRSVP 92 Score = 35.9 bits (79), Expect = 0.014 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%) Frame = +1 Query: 256 GVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 399 G+R+VP ND+ED+ +L++LVT +P +KGL T+ V+ Sbjct: 87 GIRSVPRRVRVRISRKRNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVE 136 >01_06_0668 + 31058497-31059510,31059609-31059676,31060189-31060270, 31060339-31060431,31060516-31060668,31060900-31060968, 31061091-31061184,31061594-31061677,31062133-31062221, 31062340-31062456,31062567-31062707,31062823-31063005 Length = 728 Score = 29.1 bits (62), Expect = 1.6 Identities = 15/53 (28%), Positives = 26/53 (49%) Frame = +2 Query: 110 VNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSRESEM 268 +N+ ++G GF A + E+ K A KQ+ PD + + ++ S S M Sbjct: 441 LNVDSAVYGAGFYASATPQLDELLKEASKQVQNPDNETQSLYDLWMASDSSSM 493 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,700,531 Number of Sequences: 37544 Number of extensions: 192845 Number of successful extensions: 391 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 384 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 391 length of database: 14,793,348 effective HSP length: 75 effective length of database: 11,977,548 effective search space used: 790518168 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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