Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30863.Seq
(427 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82077-3|CAB63331.1| 122|Caenorhabditis elegans Hypothetical pr... 92 2e-19
Z82077-4|CAB63332.1| 70|Caenorhabditis elegans Hypothetical pr... 53 7e-08
Z96047-6|CAB09416.1| 922|Caenorhabditis elegans Hypothetical pr... 27 7.4
U61953-6|AAO91706.1| 341|Caenorhabditis elegans Hypothetical pr... 27 7.4
AF024614-1|AAB97161.1| 922|Caenorhabditis elegans ADAM 10 protein. 27 7.4
Z82274-12|CAJ76931.1| 304|Caenorhabditis elegans Hypothetical p... 26 9.8
Z82274-11|CAB54268.2| 315|Caenorhabditis elegans Hypothetical p... 26 9.8
Z82260-1|CAB05140.1| 332|Caenorhabditis elegans Hypothetical pr... 26 9.8
Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical pr... 26 9.8
Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical pr... 26 9.8
Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical p... 26 9.8
Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical p... 26 9.8
AF324487-1|AAK49908.1| 315|Caenorhabditis elegans JC8.12-like p... 26 9.8
AC024860-2|AAN84888.1| 173|Caenorhabditis elegans Hypothetical ... 26 9.8
>Z82077-3|CAB63331.1| 122|Caenorhabditis elegans Hypothetical
protein W09C5.6a protein.
Length = 122
Score = 91.9 bits (218), Expect = 2e-19
Identities = 40/71 (56%), Positives = 55/71 (77%)
Frame = +2
Query: 62 KKRQISHKRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNK 241
KK + + +VTREYT+++H R+ G+G KKRAPRAI EI+KFA+ QM T D+RVDT+LNK
Sbjct: 7 KKSRSTINEVVTREYTIHIHARIRGIGSKKRAPRAIDEIKKFAKIQMKTNDVRVDTKLNK 66
Query: 242 FLWSRESEMFP 274
F+WS+ + P
Sbjct: 67 FIWSKGIKNVP 77
Score = 53.2 bits (122), Expect = 7e-08
Identities = 23/51 (45%), Positives = 31/51 (60%)
Frame = +1
Query: 256 GVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 408
G++NVP+ N+DEDSA KL+TL TYVP + GL NVD+ +
Sbjct: 72 GIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHGLTNVNVDSEE 122
>Z82077-4|CAB63332.1| 70|Caenorhabditis elegans Hypothetical
protein W09C5.6b protein.
Length = 70
Score = 53.2 bits (122), Expect = 7e-08
Identities = 23/51 (45%), Positives = 31/51 (60%)
Frame = +1
Query: 256 GVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 408
G++NVP+ N+DEDSA KL+TL TYVP + GL NVD+ +
Sbjct: 20 GIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHGLTNVNVDSEE 70
Score = 35.5 bits (78), Expect = 0.016
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 200 MGTPDIRVDTRLNKFLWSRESEMFP 274
M T D+RVDT+LNKF+WS+ + P
Sbjct: 1 MKTNDVRVDTKLNKFIWSKGIKNVP 25
>Z96047-6|CAB09416.1| 922|Caenorhabditis elegans Hypothetical
protein DY3.7 protein.
Length = 922
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = +2
Query: 71 QISHKRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAE 193
+I+H++ + NL +++ G GF R R + +++ E
Sbjct: 171 EINHRKWRVKRDAENLSEQMQGCGFSSRVRREMTDVQNSGE 211
>U61953-6|AAO91706.1| 341|Caenorhabditis elegans Hypothetical
protein R08C7.9 protein.
Length = 341
Score = 26.6 bits (56), Expect = 7.4
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 137 VGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSRESEMFPSVSV 286
+GF + R + + K M + D+ +D + F+W+ E PSV V
Sbjct: 51 IGFALISKRTKDQAERLNVK-MKSVDVWIDEAIKIFIWADSDERIPSVFV 99
>AF024614-1|AAB97161.1| 922|Caenorhabditis elegans ADAM 10 protein.
Length = 922
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = +2
Query: 71 QISHKRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAE 193
+I+H++ + NL +++ G GF R R + +++ E
Sbjct: 171 EINHRKWRVKRDAENLSEQMQGCGFSSRVRREMTDVQNSGE 211
>Z82274-12|CAJ76931.1| 304|Caenorhabditis elegans Hypothetical
protein JC8.12b protein.
Length = 304
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 334 LFTLVTYVPVASIKGLQTENVDASQE*TPLV 426
L+T+ ++ VAS +G+ N D+ + TP++
Sbjct: 70 LYTISQWITVASFEGIAMPNFDSVKRLTPIL 100
>Z82274-11|CAB54268.2| 315|Caenorhabditis elegans Hypothetical
protein JC8.12a protein.
Length = 315
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 334 LFTLVTYVPVASIKGLQTENVDASQE*TPLV 426
L+T+ ++ VAS +G+ N D+ + TP++
Sbjct: 81 LYTISQWITVASFEGIAMPNFDSVKRLTPIL 111
>Z82260-1|CAB05140.1| 332|Caenorhabditis elegans Hypothetical
protein C32H11.2 protein.
Length = 332
Score = 26.2 bits (55), Expect = 9.8
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -2
Query: 186 NFRISLIALGARFLNPTP*SRLCKLTVYSRVTIRLWLICLFF 61
++ IS +A+ F+ P + + R R+W++CLFF
Sbjct: 121 HYLISFLAIRKCFVYFFPSTERTIFPILGRFYKRVWILCLFF 162
>Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6a protein.
Length = 1067
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 15 FWYTKLKITMAKPKGERKGKSAINELLPVNIQLIYTNDFMVLDLKS 152
F +T+ K+T P A+N+ I+L NDF+ ++S
Sbjct: 732 FVHTRSKLTAFYPTCSSHDMKAVNKKFDEEIKLTDNNDFVQFSMRS 777
>Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6b protein.
Length = 1067
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 15 FWYTKLKITMAKPKGERKGKSAINELLPVNIQLIYTNDFMVLDLKS 152
F +T+ K+T P A+N+ I+L NDF+ ++S
Sbjct: 732 FVHTRSKLTAFYPTCSSHDMKAVNKKFDEEIKLTDNNDFVQFSMRS 777
>Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6a protein.
Length = 1067
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 15 FWYTKLKITMAKPKGERKGKSAINELLPVNIQLIYTNDFMVLDLKS 152
F +T+ K+T P A+N+ I+L NDF+ ++S
Sbjct: 732 FVHTRSKLTAFYPTCSSHDMKAVNKKFDEEIKLTDNNDFVQFSMRS 777
>Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6b protein.
Length = 1067
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 15 FWYTKLKITMAKPKGERKGKSAINELLPVNIQLIYTNDFMVLDLKS 152
F +T+ K+T P A+N+ I+L NDF+ ++S
Sbjct: 732 FVHTRSKLTAFYPTCSSHDMKAVNKKFDEEIKLTDNNDFVQFSMRS 777
>AF324487-1|AAK49908.1| 315|Caenorhabditis elegans JC8.12-like
protein protein.
Length = 315
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 334 LFTLVTYVPVASIKGLQTENVDASQE*TPLV 426
L+T+ ++ VAS +G+ N D+ + TP++
Sbjct: 81 LYTISQWITVASFEGIAMPNFDSVKRLTPIL 111
>AC024860-2|AAN84888.1| 173|Caenorhabditis elegans Hypothetical
protein Y71H2AR.3 protein.
Length = 173
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 131 HGVGFKKRAPRAIKEIRKFAEKQMGTPDIRV 223
+ V K + P+ I++IRKF + + +PD V
Sbjct: 126 YNVDSKIKQPQVIEDIRKFVKIHVDSPDSEV 156
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,593,618
Number of Sequences: 27780
Number of extensions: 184074
Number of successful extensions: 396
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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