Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30862.Seq
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0509 - 9003330-9003446,9003587-9003673,9004113-9004280,900... 106 2e-23
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 34 0.099
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 31 0.92
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 30 1.6
06_01_1184 - 10160902-10161093,10161231-10161354,10161470-101616... 29 2.1
03_02_0137 + 5832608-5833590,5833680-5833731,5833827-5833904,583... 29 3.7
11_01_0783 - 6554140-6554400,6554742-6556491,6556531-6556844 28 4.9
09_04_0528 - 18348071-18348136,18348477-18351209 28 6.5
08_02_0277 - 15226062-15226169,15227075-15227203,15227416-152275... 28 6.5
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 28 6.5
>03_02_0509 -
9003330-9003446,9003587-9003673,9004113-9004280,
9004835-9004957,9005081-9005170,9005275-9005295
Length = 201
Score = 106 bits (254), Expect = 2e-23
Identities = 53/114 (46%), Positives = 73/114 (64%)
Frame = +3
Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLE 434
FS+K+ KL+K KF L VDM+KVK+DV+KPWI ++TE+L ED+V+I ++ LE
Sbjct: 17 FSNKQAKLLKTQKFAPELEHLVDMTKVKMDVMKPWIATRVTELLGFEDEVLINFIYGLLE 76
Query: 435 EKFPCPKKMADQLDWIPKWKERTPFMGELWELLLSAQASENGIPESFTQQKKEE 596
EK KK+ QL + K FM ELW LLLSAQ + +G+P+ F K+ E
Sbjct: 77 EKEADGKKIQIQLTGFME-KNTVKFMKELWSLLLSAQQNASGVPQQFLDAKEAE 129
>08_02_0672 - 19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 33.9 bits (74), Expect = 0.099
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = +3
Query: 348 LKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMADQLDWIPKWKERTPFMGELWE 527
++PWI +KI E L E+ +++Y+ + ++ KM + L I E F+ ++W
Sbjct: 843 MRPWIAKKIIEFLGEEESTLVDYIVSCTKDHVQA-SKMLELLQSILD-VEAEMFVLKMWR 900
Query: 528 LLL 536
+L+
Sbjct: 901 MLI 903
>01_01_0908 +
7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 30.7 bits (66), Expect = 0.92
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +3
Query: 267 EKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILN 389
+KKLMK+ + T Q D+S KL KP + ++EI+N
Sbjct: 339 DKKLMKKQQHSKKRTAQADVSDAKLCRRKPKKVRLLSEIIN 379
>05_05_0348 + 24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 267 EKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMED-DVVIEYVTNQLEEKF 443
E +L K K + + Q ++ +LD LK K E+ ME+ D +I +L
Sbjct: 816 EMELAKAKKEVESMNAQFSYNEKRLDSLKAASHPKADEVRRMEELDDIISAEQAELNRLA 875
Query: 444 PCPKKMADQ 470
C K+ DQ
Sbjct: 876 KCSSKLKDQ 884
>06_01_1184 -
10160902-10161093,10161231-10161354,10161470-10161661,
10162141-10162664,10162696-10162803
Length = 379
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +1
Query: 388 TWKMMLSLNMSPTSLKKSSHAQRKWQINLTGFLNGKNARLSWESYGS 528
+WK ++ ++ + + +SH +KW +L G ++A+ W + G+
Sbjct: 267 SWKTLVKISHA-AYCETTSHVAKKWATDLKGQTKLEDAKFDWNTLGT 312
>03_02_0137 +
5832608-5833590,5833680-5833731,5833827-5833904,
5835228-5835347,5835618-5835716,5835821-5835975,
5836117-5836257,5836395-5836503
Length = 578
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 409 LNMSPTSLKKSSHAQRKWQINLTGFLNGKNARLSWESYGSC--C*ARR 546
+ M P S+ S+ L L+GK+ RLSW+S S C +RR
Sbjct: 297 IGMPPVSVSSSAEFLNAGPNRLCSSLDGKSDRLSWDSRTSAGGCRSRR 344
>11_01_0783 - 6554140-6554400,6554742-6556491,6556531-6556844
Length = 774
Score = 28.3 bits (60), Expect = 4.9
Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Frame = +3
Query: 261 DKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYVTN--QLE 434
+K +++ KQ+ + + Q+ S + V+K WI + + ++ +DV+ +Y + QLE
Sbjct: 40 EKVEEIRKQLTIMNSVILQIGTSYLTGIVVKNWIAE-VRKLAYHVEDVMDKYSYHAIQLE 98
Query: 435 EKFPCPKKMADQLDWIPKWKERTPFMGELW---ELLLSAQASENGIPES 572
E+ +A+++ + K ++ + E W L Q +E G P S
Sbjct: 99 EEGFLKNDIAEEVVKLEKQIQQVIKLKEQWLHPSQLNPNQLAETGRPRS 147
>09_04_0528 - 18348071-18348136,18348477-18351209
Length = 932
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/68 (22%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Frame = +3
Query: 270 KKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYV----TNQLEE 437
+++ K+++ + +++ M+ K +V++ WI Q + + + +DVV E++ N+ ++
Sbjct: 49 RQIKKELEIINAFLKELGMNGYKGEVVETWIRQ-VRRLAHDMEDVVDEFMYVVGKNKHKK 107
Query: 438 KFPCPKKM 461
+ C KK+
Sbjct: 108 SWACVKKI 115
>08_02_0277 -
15226062-15226169,15227075-15227203,15227416-15227583,
15227665-15228123,15228865-15229008
Length = 335
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Frame = +3
Query: 252 PFSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVL----KPWITQKITEILNMEDDVVIEYV 419
P S++ ++ K+ F D T+ +D+SK L L + + K E+ +M+D V+ Y
Sbjct: 120 PQSNRRRRGTKRTAFSDSDTEDLDLSKEDLTKLVLEKEELLKSKDEEVKDMKDKVLRSYA 179
Query: 420 TNQLEEKFPCPKKMAD 467
++E K+ +D
Sbjct: 180 --EMENVIARTKRESD 193
>03_05_0754 + 27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 27.9 bits (59), Expect = 6.5
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Frame = +3
Query: 360 ITQKITEILNMEDDVVIEYVTNQ--LEEKFPCPKK----MADQ--LDWIPKWKERTPFMG 515
+ +K +EI+ + D ++E T E+K+ C ++ M DQ DW E+ +
Sbjct: 850 VNRKYSEIVEVFDKKLLELETRLSFFEQKYTCREQELMEMFDQEEADWYTLIAEKENAIS 909
Query: 516 ELWELLLSAQASENGIPESFTQQKKE 593
E+ E + SAQ + ES +++ E
Sbjct: 910 EIQENVESAQVDIKHLVESASEKLAE 935
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,308,301
Number of Sequences: 37544
Number of extensions: 307752
Number of successful extensions: 660
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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