Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30862.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)             103   1e-22
SB_27055| Best HMM Match : PWI (HMM E-Value=3.5e-08)                   34   0.10 
SB_45350| Best HMM Match : PAN (HMM E-Value=0.00039)                   28   6.6  
SB_41375| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_42182| Best HMM Match : Adeno_E4 (HMM E-Value=8.8)                  27   8.7  
SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  

>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score =  103 bits (246), Expect = 1e-22
 Identities = 51/92 (55%), Positives = 64/92 (69%), Gaps = 1/92 (1%)
 Frame = +3

Query: 324 MSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLE-EKFPCPKKMADQLDWIPKWKER 500
           M K+ LDVLKPWIT++IT++L  EDDVV+E+V N LE EK P PK M   +    + K  
Sbjct: 1   MEKINLDVLKPWITKRITDMLGFEDDVVLEFVFNMLESEKHPDPKVMQINITGFLQAKNA 60

Query: 501 TPFMGELWELLLSAQASENGIPESFTQQKKEE 596
             FMGELWELL+SAQ +  GIP  F ++KKEE
Sbjct: 61  RIFMGELWELLVSAQENIGGIPTEFLEKKKEE 92


>SB_27055| Best HMM Match : PWI (HMM E-Value=3.5e-08)
          Length = 677

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
 Frame = +3

Query: 324 MSKVKLDVLKPWITQKITEILNMEDDVVIE---YVTNQLEEKFPCPKKMADQLDWIPKWK 494
           +SK +L+ LKPWI  K+ + L   +  V+    Y  ++  +K    +++A  LD +    
Sbjct: 4   ISKRELEELKPWIEDKVRKRLGFSEKSVVSAALYCVSKNLDKRSSREQLASLLDDL---- 59

Query: 495 ERTPFMGELWELLLSAQASENGIPESFTQQKK 590
               F+ +L++ + S + S++  P+  +Q KK
Sbjct: 60  -APQFVDDLFDKVESIRISKHSGPQKGSQSKK 90


>SB_45350| Best HMM Match : PAN (HMM E-Value=0.00039)
          Length = 334

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 474 DWIPKWKERTPFMGELWELLLSAQASENGIPESFT 578
           +W P + + T   G+ W L+LS   + + +PE F+
Sbjct: 148 NWYPVYCDFTSEAGKAWTLVLSFSYANHAMPEFFS 182


>SB_41375| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 440 VPMPKENGRST*LDS*MERTHAFHGRVMGAVAERAG 547
           +P   ++G+S  + S   R HA HG  M +  + AG
Sbjct: 30  IPFDPDDGKSIPMTSTSPRMHAAHGMAMRSATQTAG 65


>SB_42182| Best HMM Match : Adeno_E4 (HMM E-Value=8.8)
          Length = 185

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 440 VPMPKENGRST*LDS*MERTHAFHGRVMGAVAERAG 547
           +P   ++G S  + S   RTHA HG    +  + AG
Sbjct: 30  IPFDPDDGESIPMTSTSSRTHAAHGMATRSATQTAG 65


>SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1668

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
 Frame = +3

Query: 261 DKEKKLMKQMKFGDCL---TQQVDMSKVKL-----DVLKPWITQKITEILNMEDDV-VIE 413
           D   +LMK + F DC+   TQQ +  +++      D+LK +++   +EI   ED + V +
Sbjct: 40  DPRDRLMKPLSFSDCVGNETQQTEDPRIQWRQQQEDMLKEYLSLAQSEINEKEDFLNVKK 99

Query: 414 YVTNQLEEKF 443
              N  +E+F
Sbjct: 100 QRLNVAQEEF 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,957,484
Number of Sequences: 59808
Number of extensions: 366670
Number of successful extensions: 742
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)