Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30862.Seq
(598 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetit... 137 2e-32
AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetit... 137 2e-32
AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetit... 137 2e-32
AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetit... 137 2e-32
AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetit... 137 2e-32
AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear... 137 2e-32
AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear... 137 2e-32
BC001954-1|AAH01954.1| 683|Homo sapiens PRP3 pre-mRNA processin... 37 0.062
BC000184-1|AAH00184.1| 683|Homo sapiens PRP3 pre-mRNA processin... 37 0.062
AL611942-1|CAH70312.1| 683|Homo sapiens PRP3 pre-mRNA processin... 37 0.062
AK222825-1|BAD96545.1| 683|Homo sapiens PRP3 pre-mRNA processin... 37 0.062
AF016370-1|AAC51926.1| 683|Homo sapiens U4/U6 small nuclear rib... 37 0.062
AF001947-1|AAC09069.1| 682|Homo sapiens U4/U6-associated RNA sp... 37 0.062
>BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 137 bits (332), Expect = 2e-32
Identities = 66/114 (57%), Positives = 83/114 (72%)
Frame = +3
Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLE 434
FS+K+KKL+KQ+KF +CL ++VDMSKV L+V+KPWIT+++TEIL EDDVVIE++ NQLE
Sbjct: 17 FSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLE 76
Query: 435 EKFPCPKKMADQLDWIPKWKERTPFMGELWELLLSAQASENGIPESFTQQKKEE 596
K P K M L K FMGELW LLLSAQ + GIP +F + KKEE
Sbjct: 77 VKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEE 130
>AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 137 bits (332), Expect = 2e-32
Identities = 66/114 (57%), Positives = 83/114 (72%)
Frame = +3
Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLE 434
FS+K+KKL+KQ+KF +CL ++VDMSKV L+V+KPWIT+++TEIL EDDVVIE++ NQLE
Sbjct: 17 FSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLE 76
Query: 435 EKFPCPKKMADQLDWIPKWKERTPFMGELWELLLSAQASENGIPESFTQQKKEE 596
K P K M L K FMGELW LLLSAQ + GIP +F + KKEE
Sbjct: 77 VKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEE 130
>AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 137 bits (332), Expect = 2e-32
Identities = 66/114 (57%), Positives = 83/114 (72%)
Frame = +3
Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLE 434
FS+K+KKL+KQ+KF +CL ++VDMSKV L+V+KPWIT+++TEIL EDDVVIE++ NQLE
Sbjct: 17 FSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLE 76
Query: 435 EKFPCPKKMADQLDWIPKWKERTPFMGELWELLLSAQASENGIPESFTQQKKEE 596
K P K M L K FMGELW LLLSAQ + GIP +F + KKEE
Sbjct: 77 VKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEE 130
>AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 137 bits (332), Expect = 2e-32
Identities = 66/114 (57%), Positives = 83/114 (72%)
Frame = +3
Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLE 434
FS+K+KKL+KQ+KF +CL ++VDMSKV L+V+KPWIT+++TEIL EDDVVIE++ NQLE
Sbjct: 17 FSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLE 76
Query: 435 EKFPCPKKMADQLDWIPKWKERTPFMGELWELLLSAQASENGIPESFTQQKKEE 596
K P K M L K FMGELW LLLSAQ + GIP +F + KKEE
Sbjct: 77 VKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEE 130
>AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 137 bits (332), Expect = 2e-32
Identities = 66/114 (57%), Positives = 83/114 (72%)
Frame = +3
Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLE 434
FS+K+KKL+KQ+KF +CL ++VDMSKV L+V+KPWIT+++TEIL EDDVVIE++ NQLE
Sbjct: 17 FSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLE 76
Query: 435 EKFPCPKKMADQLDWIPKWKERTPFMGELWELLLSAQASENGIPESFTQQKKEE 596
K P K M L K FMGELW LLLSAQ + GIP +F + KKEE
Sbjct: 77 VKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEE 130
>AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 137 bits (332), Expect = 2e-32
Identities = 66/114 (57%), Positives = 83/114 (72%)
Frame = +3
Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLE 434
FS+K+KKL+KQ+KF +CL ++VDMSKV L+V+KPWIT+++TEIL EDDVVIE++ NQLE
Sbjct: 17 FSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLE 76
Query: 435 EKFPCPKKMADQLDWIPKWKERTPFMGELWELLLSAQASENGIPESFTQQKKEE 596
K P K M L K FMGELW LLLSAQ + GIP +F + KKEE
Sbjct: 77 VKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEE 130
>AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 137 bits (332), Expect = 2e-32
Identities = 66/114 (57%), Positives = 83/114 (72%)
Frame = +3
Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLE 434
FS+K+KKL+KQ+KF +CL ++VDMSKV L+V+KPWIT+++TEIL EDDVVIE++ NQLE
Sbjct: 17 FSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLE 76
Query: 435 EKFPCPKKMADQLDWIPKWKERTPFMGELWELLLSAQASENGIPESFTQQKKEE 596
K P K M L K FMGELW LLLSAQ + GIP +F + KKEE
Sbjct: 77 VKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEE 130
>BC001954-1|AAH01954.1| 683|Homo sapiens PRP3 pre-mRNA processing
factor 3 homolog (S. cerevisiae) protein.
Length = 683
Score = 36.7 bits (81), Expect = 0.062
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Frame = +3
Query: 324 MSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMADQLDWIPKWKERT 503
+SK +LD LKPWI + + +L + V+ N + + KK AD L P + T
Sbjct: 3 LSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMD-KKKAADHLK--PFLDDST 59
Query: 504 -PFMGELWELLLSAQASENGIPESFTQQKKE 593
F+ +L+E + ++S + S +K+E
Sbjct: 60 LRFVDKLFEAVEEGRSSRHSKSSSDRSRKRE 90
>BC000184-1|AAH00184.1| 683|Homo sapiens PRP3 pre-mRNA processing
factor 3 homolog (S. cerevisiae) protein.
Length = 683
Score = 36.7 bits (81), Expect = 0.062
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Frame = +3
Query: 324 MSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMADQLDWIPKWKERT 503
+SK +LD LKPWI + + +L + V+ N + + KK AD L P + T
Sbjct: 3 LSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMD-KKKAADHLK--PFLDDST 59
Query: 504 -PFMGELWELLLSAQASENGIPESFTQQKKE 593
F+ +L+E + ++S + S +K+E
Sbjct: 60 LRFVDKLFEAVEEGRSSRHSKSSSDRSRKRE 90
>AL611942-1|CAH70312.1| 683|Homo sapiens PRP3 pre-mRNA processing
factor 3 homolog (S. cerevisiae) protein.
Length = 683
Score = 36.7 bits (81), Expect = 0.062
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Frame = +3
Query: 324 MSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMADQLDWIPKWKERT 503
+SK +LD LKPWI + + +L + V+ N + + KK AD L P + T
Sbjct: 3 LSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMD-KKKAADHLK--PFLDDST 59
Query: 504 -PFMGELWELLLSAQASENGIPESFTQQKKE 593
F+ +L+E + ++S + S +K+E
Sbjct: 60 LRFVDKLFEAVEEGRSSRHSKSSSDRSRKRE 90
>AK222825-1|BAD96545.1| 683|Homo sapiens PRP3 pre-mRNA processing
factor 3 homolog protein.
Length = 683
Score = 36.7 bits (81), Expect = 0.062
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Frame = +3
Query: 324 MSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMADQLDWIPKWKERT 503
+SK +LD LKPWI + + +L + V+ N + + KK AD L P + T
Sbjct: 3 LSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMD-KKKAADHLK--PFLDDST 59
Query: 504 -PFMGELWELLLSAQASENGIPESFTQQKKE 593
F+ +L+E + ++S + S +K+E
Sbjct: 60 LRFVDKLFEAVEEGRSSRHSKSSSDRSRKRE 90
>AF016370-1|AAC51926.1| 683|Homo sapiens U4/U6 small nuclear
ribonucleoprotein hPrp3 protein.
Length = 683
Score = 36.7 bits (81), Expect = 0.062
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Frame = +3
Query: 324 MSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMADQLDWIPKWKERT 503
+SK +LD LKPWI + + +L + V+ N + + KK AD L P + T
Sbjct: 3 LSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMD-KKKAADHLK--PFLDDST 59
Query: 504 -PFMGELWELLLSAQASENGIPESFTQQKKE 593
F+ +L+E + ++S + S +K+E
Sbjct: 60 LRFVDKLFEAVEEGRSSRHSKSSSDRSRKRE 90
>AF001947-1|AAC09069.1| 682|Homo sapiens U4/U6-associated RNA
splicing factor protein.
Length = 682
Score = 36.7 bits (81), Expect = 0.062
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Frame = +3
Query: 324 MSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMADQLDWIPKWKERT 503
+SK +LD LKPWI + + +L + V+ N + + KK AD L P + T
Sbjct: 3 LSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMD-KKKAADHLK--PFLDDST 59
Query: 504 -PFMGELWELLLSAQASENGIPESFTQQKKE 593
F+ +L+E + ++S + S +K+E
Sbjct: 60 LRFVDKLFEAVEEGRSSRHSKSSSDRSRKRE 90
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,395,486
Number of Sequences: 237096
Number of extensions: 1726022
Number of successful extensions: 6988
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6979
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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