Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30862.Seq
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 118 4e-27
Z75552-9|CAA99945.2| 705|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z75551-6|CAA99937.2| 705|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z75551-3|CAA99936.2| 547|Caenorhabditis elegans Hypothetical pr... 39 0.003
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p... 31 0.62
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p... 31 0.62
AF016658-5|AAB66044.1| 186|Caenorhabditis elegans Hypothetical ... 29 2.5
Z79759-4|CAB02139.2| 395|Caenorhabditis elegans Hypothetical pr... 29 3.3
U67737-1|AAC63596.1| 395|Caenorhabditis elegans MEL-26 protein. 29 3.3
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 118 bits (283), Expect = 4e-27
Identities = 53/114 (46%), Positives = 77/114 (67%)
Frame = +3
Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLE 434
FSDKEKKL+K MKF L Q++D+++ +DV+KPWIT ++ +IL MEDDVV+EY+ +Q++
Sbjct: 17 FSDKEKKLLKTMKFEPQLEQKIDLNRCNMDVIKPWITARVNDILGMEDDVVVEYILSQID 76
Query: 435 EKFPCPKKMADQLDWIPKWKERTPFMGELWELLLSAQASENGIPESFTQQKKEE 596
+K PK + + + F+G+LW LL+ A ASE+GIP S QK E
Sbjct: 77 DKNLNPKLLQINVTGFLNARRAREFVGDLWNLLIEANASEDGIPASLVNQKMAE 130
>Z75552-9|CAA99945.2| 705|Caenorhabditis elegans Hypothetical
protein W04D2.6a protein.
Length = 705
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +3
Query: 342 DVLKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMADQLDWIPKWKERTPFMGEL 521
D ++PW+ +K+T+ L ED +++ +Q+E++ + + D I + E+ F+ ++
Sbjct: 632 DRIRPWVAKKVTQFLGEEDKSFCDFICDQIEKQATPQEILKDVAVIIDEDAEQ--FVIKM 689
Query: 522 WELLL-SAQASENGI 563
W LL+ QA GI
Sbjct: 690 WRLLIYEGQARRLGI 704
>Z75551-6|CAA99937.2| 705|Caenorhabditis elegans Hypothetical
protein W04D2.6a protein.
Length = 705
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +3
Query: 342 DVLKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMADQLDWIPKWKERTPFMGEL 521
D ++PW+ +K+T+ L ED +++ +Q+E++ + + D I + E+ F+ ++
Sbjct: 632 DRIRPWVAKKVTQFLGEEDKSFCDFICDQIEKQATPQEILKDVAVIIDEDAEQ--FVIKM 689
Query: 522 WELLL-SAQASENGI 563
W LL+ QA GI
Sbjct: 690 WRLLIYEGQARRLGI 704
>Z75551-3|CAA99936.2| 547|Caenorhabditis elegans Hypothetical
protein W04D2.6b protein.
Length = 547
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +3
Query: 342 DVLKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMADQLDWIPKWKERTPFMGEL 521
D ++PW+ +K+T+ L ED +++ +Q+E++ + + D I + E+ F+ ++
Sbjct: 474 DRIRPWVAKKVTQFLGEEDKSFCDFICDQIEKQATPQEILKDVAVIIDEDAEQ--FVIKM 531
Query: 522 WELLL-SAQASENGI 563
W LL+ QA GI
Sbjct: 532 WRLLIYEGQARRLGI 546
>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
protein F52C9.1a protein.
Length = 1336
Score = 31.1 bits (67), Expect = 0.62
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 360 ITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMADQLDWIPKW 491
+ ++ ++LN D +++Y +Q + C + +LDWI KW
Sbjct: 52 LEKEFEKLLNTSFDPLMDYEEHQRVKNGVCSPAKSTKLDWITKW 95
>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
protein F52C9.1b protein.
Length = 1331
Score = 31.1 bits (67), Expect = 0.62
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 360 ITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMADQLDWIPKW 491
+ ++ ++LN D +++Y +Q + C + +LDWI KW
Sbjct: 52 LEKEFEKLLNTSFDPLMDYEEHQRVKNGVCSPAKSTKLDWITKW 95
>AF016658-5|AAB66044.1| 186|Caenorhabditis elegans Hypothetical
protein B0047.4 protein.
Length = 186
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 351 KPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMADQLDW 479
+P T + TE N+ + I TN+L F C K D++DW
Sbjct: 36 QPAYTGRSTENFNIPWFIEILRKTNRLAVYFHCDKLKEDEIDW 78
>Z79759-4|CAB02139.2| 395|Caenorhabditis elegans Hypothetical
protein ZK858.4 protein.
Length = 395
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 324 MSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLE 434
+S +K DVL P I + I+N+E DV +E +T E
Sbjct: 138 VSYIKRDVLFPQIMPRDMIIVNVEIDVAVETITTTNE 174
>U67737-1|AAC63596.1| 395|Caenorhabditis elegans MEL-26 protein.
Length = 395
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 324 MSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLE 434
+S +K DVL P I + I+N+E DV +E +T E
Sbjct: 138 VSYIKRDVLFPQIMPRDMIIVNVEIDVAVETITTTNE 174
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,588,894
Number of Sequences: 27780
Number of extensions: 284584
Number of successful extensions: 736
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -