Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30862.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.75 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.2  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 243 AGHPFSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMED 398
           A      +E  L    K G C   Q  MSK++    KP + ++ T++  +E+
Sbjct: 5   ASQLLKSRESLLSNAYKQGFCQPTQRTMSKIQWRKPKPAMVEEKTQLRYLEE 56


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 465 DQLDWIPKWKERTP 506
           DQ +W+ +WKE  P
Sbjct: 625 DQWNWVYEWKELIP 638


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 3   LIYFILVILLLEYFVFLKHTF 65
           LIYFI  I L  Y+ FL+  F
Sbjct: 220 LIYFIEDIGLNTYYFFLRQAF 240


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = +3

Query: 477 WIPKWKE 497
           WIPKW++
Sbjct: 422 WIPKWRQ 428


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 294 TSFASSASSPCH*TGVLLCTSSRIHHHLAN 205
           T+  ++A++    TG++   + + HHHL N
Sbjct: 117 TTATAAATATTTATGLIKQETLQRHHHLQN 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,837
Number of Sequences: 438
Number of extensions: 3512
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)