Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30862.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    95   2e-20
At5g47840.1 68418.m05911 adenylate kinase, chloroplast, putative...    28   4.1  
At5g36230.1 68418.m04371 eIF4-gamma/eIF5/eIF2-epsilon domain-con...    28   5.4  
At4g23130.2 68417.m03334 receptor-like protein kinase 6 (RLK6) i...    28   5.4  
At4g23130.1 68417.m03333 receptor-like protein kinase 6 (RLK6) i...    28   5.4  
At1g18720.1 68414.m02335 expressed protein similar to YGL010w-li...    27   9.5  

>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 95.5 bits (227), Expect = 2e-20
 Identities = 48/114 (42%), Positives = 71/114 (62%)
 Frame = +3

Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLE 434
           FS+K+ KLMK  KF   L   VD++KVK+DV+KPWI  ++TE+L +ED+V+I ++   L+
Sbjct: 17  FSNKQAKLMKSQKFAPELENLVDITKVKMDVMKPWIATRVTELLGIEDEVLINFIYGLLD 76

Query: 435 EKFPCPKKMADQLDWIPKWKERTPFMGELWELLLSAQASENGIPESFTQQKKEE 596
            K    K++   L    + K    FM ELW LLLSAQ + +G+P+ F   +  E
Sbjct: 77  GKVVNGKEIQITLTGFME-KNTGKFMKELWTLLLSAQNNPSGVPQQFLDARAAE 129


>At5g47840.1 68418.m05911 adenylate kinase, chloroplast, putative /
           ATP-AMP transphosphorylase, putative similar to
           SP|P43188 Adenylate kinase, chloroplast (EC 2.7.4.3)
           (ATP-AMP transphosphorylase) {Zea mays}; contains Pfam
           profile PF00406: Adenylate kinase
          Length = 283

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = +3

Query: 306 LTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLEEK 440
           LTQ+ D ++ K  +      Q ++++L+M DD+ I+   N+ +E+
Sbjct: 214 LTQRFDDTEEKAKLRLKTHNQNVSDVLSMYDDITIKIEGNRSKEE 258


>At5g36230.1 68418.m04371 eIF4-gamma/eIF5/eIF2-epsilon
           domain-containing protein low similarity to SP|Q13144
           Translation initiation factor eIF-2B epsilon subunit
           (eIF-2B GDP-GTP exchange factor) {Homo sapiens};
           contains Pfam profile PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon
          Length = 411

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 324 MSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLEE-KFP 446
           M +VKL  +K  +T K+TE  N+  D VIE V  Q+++ K P
Sbjct: 248 MFEVKLREIKTVLTSKVTEESNV--DEVIESVKQQIKDAKLP 287


>At4g23130.2 68417.m03334 receptor-like protein kinase 6 (RLK6)
           identical to receptor-like protein kinase 6 [Arabidopsis
           thaliana] GI:13506749; contains Pfam domain PF00069:
           Protein kinase domain
          Length = 663

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 393 EDDVVIEYVTNQLEEKFPCPKKMADQLDWIPKWK 494
           E  +V E+V+N+  + F    +M  QLDW  ++K
Sbjct: 412 EKILVYEFVSNKSLDYFLFDSRMQSQLDWTTRYK 445


>At4g23130.1 68417.m03333 receptor-like protein kinase 6 (RLK6)
           identical to receptor-like protein kinase 6 [Arabidopsis
           thaliana] GI:13506749; contains Pfam domain PF00069:
           Protein kinase domain
          Length = 659

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 393 EDDVVIEYVTNQLEEKFPCPKKMADQLDWIPKWK 494
           E  +V E+V+N+  + F    +M  QLDW  ++K
Sbjct: 408 EKILVYEFVSNKSLDYFLFDSRMQSQLDWTTRYK 441


>At1g18720.1 68414.m02335 expressed protein similar to YGL010w-like
           protein GI:2982301 from [Picea mariana]
          Length = 206

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -3

Query: 482 NPVKLICHFLWAWELFFKLVGDIFNDNIIF 393
           NP+ ++ H ++ W +FF ++  + +   IF
Sbjct: 23  NPINILIHIIFVWPIFFSVLLLLHSSTPIF 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,802,567
Number of Sequences: 28952
Number of extensions: 263895
Number of successful extensions: 688
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)