Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30860.Seq
         (449 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5MIP9 Cluster: Mitochondrial ATP synthase coupling fac...    53   3e-06
UniRef50_Q09JF4 Cluster: Mitochondrial F1F0 ATP-synthase subunit...    41   0.011
UniRef50_Q24407 Cluster: ATP synthase-coupling factor 6, mitocho...    39   0.044
UniRef50_Q29E93 Cluster: GA11349-PA; n=1; Drosophila pseudoobscu...    37   0.18 
UniRef50_Q4QQ07 Cluster: IP06415p; n=2; Drosophila melanogaster|...    37   0.23 
UniRef50_UPI00003C0C25 Cluster: PREDICTED: similar to ATPase cou...    36   0.41 
UniRef50_UPI0000584DD8 Cluster: PREDICTED: similar to MGC68738 p...    33   2.2  
UniRef50_Q6NYF7 Cluster: ATP synthase, H+ transporting, mitochon...    33   2.9  
UniRef50_UPI00015605E4 Cluster: PREDICTED: similar to Neuroepith...    33   3.8  

>UniRef50_Q5MIP9 Cluster: Mitochondrial ATP synthase coupling factor
           6; n=3; Endopterygota|Rep: Mitochondrial ATP synthase
           coupling factor 6 - Aedes albopictus (Forest day
           mosquito)
          Length = 106

 Score = 53.2 bits (122), Expect = 3e-06
 Identities = 25/60 (41%), Positives = 34/60 (56%)
 Frame = -3

Query: 255 QQKSAXGKXPDASXAVXXXXXXXXXXXXKQYGGGPGIDMTAXPSLKFEEPKLDPIDEQAA 76
           + KS+ GK  D +  +            KQYGG  G+DMTA P+ KFEEPK+ PI+  +A
Sbjct: 47  KSKSSGGKLVDPTPEIERELKQELEKLAKQYGGASGVDMTAFPTFKFEEPKMGPINSSSA 106



 Score = 33.5 bits (73), Expect = 2.2
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -1

Query: 305 KATDPIQQLFLDKIXEYNRRARXXKXQMP 219
           KATDPIQQLF++K+ +Y  ++   K   P
Sbjct: 30  KATDPIQQLFVNKLRDYKSKSSGGKLVDP 58


>UniRef50_Q09JF4 Cluster: Mitochondrial F1F0 ATP-synthase subunit
           Cf6; n=1; Argas monolakensis|Rep: Mitochondrial F1F0
           ATP-synthase subunit Cf6 - Argas monolakensis
          Length = 109

 Score = 41.1 bits (92), Expect = 0.011
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = -3

Query: 168 QYGGGPGIDMTAXPSLKFEEPKLDPI 91
           QYGGG GIDMT  P  KF +P+LD +
Sbjct: 79  QYGGGKGIDMTKFPEFKFADPQLDSV 104



 Score = 34.7 bits (76), Expect = 0.94
 Identities = 12/23 (52%), Positives = 20/23 (86%)
 Frame = -1

Query: 308 QKATDPIQQLFLDKIXEYNRRAR 240
           QKA DP+Q+LF+DK+ EY ++++
Sbjct: 30  QKALDPVQKLFVDKLREYTQKSK 52


>UniRef50_Q24407 Cluster: ATP synthase-coupling factor 6,
           mitochondrial precursor; n=4; Endopterygota|Rep: ATP
           synthase-coupling factor 6, mitochondrial precursor -
           Drosophila melanogaster (Fruit fly)
          Length = 106

 Score = 39.1 bits (87), Expect = 0.044
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = -1

Query: 374 SKLVGLRAATTSMMVSRNLAAA--QKATDPIQQLFLDKIXEYNRRARXXK 231
           S L G+R   T    +  + A    KA+DPIQQLFLDK+ EY +++   K
Sbjct: 5   SLLSGMRVLRTEARRNFGIVAPALNKASDPIQQLFLDKVREYKQKSAGGK 54



 Score = 33.9 bits (74), Expect = 1.6
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -3

Query: 255 QQKSAXGKXPDASXAVXXXXXXXXXXXXKQYGGGPGIDMTAXPSLKFEEPKLDPIDE 85
           +QKSA GK  D++  +            KQ+G     DM   P  +F + K+DPI +
Sbjct: 47  KQKSAGGKLVDSNPDIERELKTELDRVAKQFGSDGKTDMLKFPEFQFPDVKVDPITQ 103


>UniRef50_Q29E93 Cluster: GA11349-PA; n=1; Drosophila
           pseudoobscura|Rep: GA11349-PA - Drosophila pseudoobscura
           (Fruit fly)
          Length = 180

 Score = 37.1 bits (82), Expect = 0.18
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = -3

Query: 255 QQKSAXGKXPDASXAVXXXXXXXXXXXXKQYGGGPGIDMTAXPSLKFEEPKLDPI 91
           ++KS  GK  DA                 +YGGG G+DM   P  K  E  LDP+
Sbjct: 41  REKSPTGKPLDAGPEFEKELNETLEKLALKYGGGEGVDMLEFPKFKEPEVTLDPL 95


>UniRef50_Q4QQ07 Cluster: IP06415p; n=2; Drosophila
           melanogaster|Rep: IP06415p - Drosophila melanogaster
           (Fruit fly)
          Length = 159

 Score = 36.7 bits (81), Expect = 0.23
 Identities = 19/60 (31%), Positives = 23/60 (38%)
 Frame = -3

Query: 249 KSAXGKXPDASXAVXXXXXXXXXXXXKQYGGGPGIDMTAXPSLKFEEPKLDPIDEQAAPK 70
           KS  GK  D                  QYGGG G+DM   P  K  +  +DPI     P+
Sbjct: 54  KSPKGKPVDPGPEFEAELKEVTERLALQYGGGEGVDMLEFPKFKLPDIDIDPISVDDLPE 113


>UniRef50_UPI00003C0C25 Cluster: PREDICTED: similar to ATPase
           coupling factor 6 CG4412-PA; n=2; Apocrita|Rep:
           PREDICTED: similar to ATPase coupling factor 6 CG4412-PA
           - Apis mellifera
          Length = 125

 Score = 35.9 bits (79), Expect = 0.41
 Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
 Frame = -1

Query: 335 MVSRNLA----AAQKATDPIQQLFLDKIXEYNRRARXXK 231
           +V RN+     A Q+A DPIQ+LFLDKI EY  ++   K
Sbjct: 43  IVKRNIGILAPAFQEAKDPIQKLFLDKIREYKAKSSGGK 81


>UniRef50_UPI0000584DD8 Cluster: PREDICTED: similar to MGC68738
           protein; n=1; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to MGC68738 protein -
           Strongylocentrotus purpuratus
          Length = 112

 Score = 33.5 bits (73), Expect = 2.2
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -1

Query: 341 SMMVSRNLAAAQKATDPIQQLFLDKIXEYNRRAR 240
           S +V     AA   TDP+Q+LF+DKI +Y+ + +
Sbjct: 27  SSVVMAKTKAAAGPTDPVQKLFVDKIRDYSNKKK 60


>UniRef50_Q6NYF7 Cluster: ATP synthase, H+ transporting,
           mitochondrial F0 complex, subunit F6; n=6;
           Euteleostomi|Rep: ATP synthase, H+ transporting,
           mitochondrial F0 complex, subunit F6 - Danio rerio
           (Zebrafish) (Brachydanio rerio)
          Length = 112

 Score = 33.1 bits (72), Expect = 2.9
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = -1

Query: 305 KATDPIQQLFLDKIXEYNRRAR 240
           K  DPIQ+LFLDKI +YN +++
Sbjct: 37  KDMDPIQKLFLDKIRDYNSKSK 58


>UniRef50_UPI00015605E4 Cluster: PREDICTED: similar to
           Neuroepithelial cell transforming gene 1; n=1; Equus
           caballus|Rep: PREDICTED: similar to Neuroepithelial cell
           transforming gene 1 - Equus caballus
          Length = 107

 Score = 32.7 bits (71), Expect = 3.8
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = -1

Query: 371 KLVGLRAATTSMMVSRNL---AAAQKATDPIQQLFLDKIXEYNRR 246
           +L  +  +  S+ + RN+   A A K  DPIQ+LF+DKI EY  +
Sbjct: 8   RLSSVVQSAISVHLRRNIGVTAVAFKELDPIQKLFVDKIREYRTK 52


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 359,454,505
Number of Sequences: 1657284
Number of extensions: 5287990
Number of successful extensions: 7668
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7668
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)