Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30860.Seq
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0289 - 11688733-11691342                                         27   7.0  
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644...    27   9.2  

>05_03_0289 - 11688733-11691342
          Length = 869

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 165 YGGGPGIDMTAXPSLKFEEPKLDPIDEQAAP 73
           YG   G+   A  +++ + PK DP  E AAP
Sbjct: 251 YGAAVGVTYQANDTVQIKYPKNDPDAEYAAP 281


>01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,
            6448164-6448243,6449045-6449129,6449221-6449312,
            6449388-6449456,6449544-6449580,6449662-6449744,
            6450427-6450873,6450978-6451014,6451101-6451158,
            6451243-6451382,6451610-6451675,6451794-6451908,
            6453261-6453299,6453482-6453543
          Length = 1927

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -1

Query: 365  VGLRAATTSMMVSRNLAAAQKATDPIQQLFLDKIXEYNRRARXXKXQMP 219
            VG + ATTS + S NL   QKA   +       + E ++  +    ++P
Sbjct: 1334 VGFQTATTSNLYSSNLCQNQKANSEVLHGVSSNLIENSKDDKKTSPKVP 1382


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,974,653
Number of Sequences: 37544
Number of extensions: 156645
Number of successful extensions: 235
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)