Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30860.Seq
         (449 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X99665-1|CAA67979.1|  106|Drosophila melanogaster mitochondrial ...    39   0.003
BT001763-1|AAN71518.1|  106|Drosophila melanogaster RH08870p pro...    39   0.003
AE014297-3317|AAF56127.1|  106|Drosophila melanogaster CG4412-PA...    39   0.003
BT023609-1|AAY85009.1|  159|Drosophila melanogaster IP06415p pro...    37   0.014
AE014296-920|AAF47954.1|  147|Drosophila melanogaster CG12027-PA...    37   0.014

>X99665-1|CAA67979.1|  106|Drosophila melanogaster mitochondrial
           ATPase couplingfactor 6 subunit protein.
          Length = 106

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = -1

Query: 374 SKLVGLRAATTSMMVSRNLAAA--QKATDPIQQLFLDKIXEYNRRARXXK 231
           S L G+R   T    +  + A    KA+DPIQQLFLDK+ EY +++   K
Sbjct: 5   SLLSGMRVLRTEARRNFGIVAPALNKASDPIQQLFLDKVREYKQKSAGGK 54



 Score = 33.9 bits (74), Expect = 0.10
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -3

Query: 255 QQKSAXGKXPDASXAVXXXXXXXXXXXXKQYGGGPGIDMTAXPSLKFEEPKLDPIDE 85
           +QKSA GK  D++  +            KQ+G     DM   P  +F + K+DPI +
Sbjct: 47  KQKSAGGKLVDSNPDIERELKTELDRVAKQFGSDGKTDMLKFPEFQFPDVKVDPITQ 103


>BT001763-1|AAN71518.1|  106|Drosophila melanogaster RH08870p
           protein.
          Length = 106

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = -1

Query: 374 SKLVGLRAATTSMMVSRNLAAA--QKATDPIQQLFLDKIXEYNRRARXXK 231
           S L G+R   T    +  + A    KA+DPIQQLFLDK+ EY +++   K
Sbjct: 5   SLLSGMRVLRTEARRNFGIVAPALNKASDPIQQLFLDKVREYKQKSAGGK 54



 Score = 33.9 bits (74), Expect = 0.10
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -3

Query: 255 QQKSAXGKXPDASXAVXXXXXXXXXXXXKQYGGGPGIDMTAXPSLKFEEPKLDPIDE 85
           +QKSA GK  D++  +            KQ+G     DM   P  +F + K+DPI +
Sbjct: 47  KQKSAGGKLVDSNPDIERELKTELDRVAKQFGSDGKTDMLKFPEFQFPDVKVDPITQ 103


>AE014297-3317|AAF56127.1|  106|Drosophila melanogaster CG4412-PA
           protein.
          Length = 106

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = -1

Query: 374 SKLVGLRAATTSMMVSRNLAAA--QKATDPIQQLFLDKIXEYNRRARXXK 231
           S L G+R   T    +  + A    KA+DPIQQLFLDK+ EY +++   K
Sbjct: 5   SLLSGMRVLRTEARRNFGIVAPALNKASDPIQQLFLDKVREYKQKSAGGK 54



 Score = 33.9 bits (74), Expect = 0.10
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -3

Query: 255 QQKSAXGKXPDASXAVXXXXXXXXXXXXKQYGGGPGIDMTAXPSLKFEEPKLDPIDE 85
           +QKSA GK  D++  +            KQ+G     DM   P  +F + K+DPI +
Sbjct: 47  KQKSAGGKLVDSNPDIERELKTELDRVAKQFGSDGKTDMLKFPEFQFPDVKVDPITQ 103


>BT023609-1|AAY85009.1|  159|Drosophila melanogaster IP06415p
           protein.
          Length = 159

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 19/60 (31%), Positives = 23/60 (38%)
 Frame = -3

Query: 249 KSAXGKXPDASXAVXXXXXXXXXXXXKQYGGGPGIDMTAXPSLKFEEPKLDPIDEQAAPK 70
           KS  GK  D                  QYGGG G+DM   P  K  +  +DPI     P+
Sbjct: 54  KSPKGKPVDPGPEFEAELKEVTERLALQYGGGEGVDMLEFPKFKLPDIDIDPISVDDLPE 113



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = -1

Query: 341 SMMVSRNLA--AAQKATDPIQQLFLDKIXEYNRRARXXKXQMP 219
           S+++ R+++  A+ +  DPI Q+FLDK+ EY  ++   K   P
Sbjct: 21  SLVLCRSVSNTASLRYKDPIYQIFLDKVREYRLKSPKGKPVDP 63


>AE014296-920|AAF47954.1|  147|Drosophila melanogaster CG12027-PA
           protein.
          Length = 147

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 19/60 (31%), Positives = 23/60 (38%)
 Frame = -3

Query: 249 KSAXGKXPDASXAVXXXXXXXXXXXXKQYGGGPGIDMTAXPSLKFEEPKLDPIDEQAAPK 70
           KS  GK  D                  QYGGG G+DM   P  K  +  +DPI     P+
Sbjct: 42  KSPKGKPVDPGPEFEAELKEVTERLALQYGGGEGVDMLEFPKFKLPDIDIDPISVDDLPE 101



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = -1

Query: 341 SMMVSRNLA--AAQKATDPIQQLFLDKIXEYNRRARXXKXQMP 219
           S+++ R+++  A+ +  DPI Q+FLDK+ EY  ++   K   P
Sbjct: 9   SLVLCRSVSNTASLRYKDPIYQIFLDKVREYRLKSPKGKPVDP 51


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,150,095
Number of Sequences: 53049
Number of extensions: 247429
Number of successful extensions: 360
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1455824790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)