Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30860.Seq
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016452-9|AAO26003.1|  494|Caenorhabditis elegans Aldehyde dehy...    27   6.3  
AF016452-8|AAM45357.1|  493|Caenorhabditis elegans Aldehyde dehy...    27   6.3  
AF016452-7|AAB66022.2|  493|Caenorhabditis elegans Aldehyde dehy...    27   6.3  

>AF016452-9|AAO26003.1|  494|Caenorhabditis elegans Aldehyde
           dehydrogenase protein4, isoform c protein.
          Length = 494

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 172 EAVWRGXRNRHDSXPISEI 116
           EAVW+  R RH+S  I EI
Sbjct: 45  EAVWKDLRRRHESTEILEI 63


>AF016452-8|AAM45357.1|  493|Caenorhabditis elegans Aldehyde
           dehydrogenase protein4, isoform b protein.
          Length = 493

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 172 EAVWRGXRNRHDSXPISEI 116
           EAVW+  R RH+S  I EI
Sbjct: 45  EAVWKDLRRRHESTEILEI 63


>AF016452-7|AAB66022.2|  493|Caenorhabditis elegans Aldehyde
           dehydrogenase protein4, isoform a protein.
          Length = 493

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 172 EAVWRGXRNRHDSXPISEI 116
           EAVW+  R RH+S  I EI
Sbjct: 45  EAVWKDLRRRHESTEILEI 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,065,402
Number of Sequences: 27780
Number of extensions: 122661
Number of successful extensions: 149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)