Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30858.Seq
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       23   1.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   3.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   3.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   5.4  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   7.1  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   7.1  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   9.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   9.4  
AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical pro...    21   9.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   9.4  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 277 VHQTAIARNNPRKAVRS 327
           +HQT I  NNPR   R+
Sbjct: 46  IHQTVIYHNNPRDPNRA 62


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 194 KVSGTVKWFNVKSGYGFINRMTPRKM 271
           K++   K     S Y FIN +T RK+
Sbjct: 357 KLADLYKSLGPDSVYSFINNLTDRKL 382


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 194 KVSGTVKWFNVKSGYGFINRMTPRKM 271
           K++   K     S Y FIN +T RK+
Sbjct: 249 KLADLYKSLGPDSVYSFINNLTDRKL 274


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 528 IPPLRGAPXPPS 493
           +PPL  +P PPS
Sbjct: 114 VPPLTPSPGPPS 125


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 303 VTGDGSLMHKHIF 265
           VTG+  +MH+H F
Sbjct: 3   VTGNLGIMHRHCF 15


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 384 SSWCYWSRW*ASXRLTLCCRQAPWLPPPIFPSSRWRTRAVKELHAE 521
           S+WC +S + ++ R  +  +  P+L P      R R  A   + AE
Sbjct: 145 STWCNYSAYSSASRHHVDHQPVPYLTP---ADDRGRVAAAAAMVAE 187


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 528 IPPLRGAPXPPSSATLTREILAVVAT 451
           +PP R  P P  S+ +  E ++V  T
Sbjct: 71  LPPKREIPSPKRSSPILAEKVSVSPT 96


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 391 GVTGPGGEPVKGSPYAADKRRGYHRQ 468
           GV GP G P   +    +   G+H Q
Sbjct: 147 GVLGPTGSPPLTTQSMNNHHMGHHMQ 172


>AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical
           protein protein.
          Length = 95

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 391 GVTGPGGEPVKGSPYAADKRR 453
           G+T  G  P K S Y   ++R
Sbjct: 48  GITSGGPIPTKSSKYPIKRKR 68


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 391 GVTGPGGEPVKGSPYAADKRRGYHRQ 468
           GV GP G P   +    +   G+H Q
Sbjct: 149 GVLGPTGSPPLTTQSMNNHHMGHHMQ 174


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,990
Number of Sequences: 336
Number of extensions: 1876
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)