Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30858.Seq
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0158 - 1103461-1104186 50 1e-06
08_01_0202 - 1638978-1639571 47 1e-05
03_06_0157 - 32039020-32039175,32039267-32039338,32039478-320396... 30 1.4
04_04_1582 - 34590698-34591199,34593849-34594690 29 2.4
03_01_0483 + 3689155-3689814 29 3.2
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427... 28 4.3
08_02_0503 - 17848739-17849004,17849109-17849268,17849368-178496... 28 5.6
08_01_0229 + 1834102-1834358,1834442-1834901 28 5.6
05_02_0119 + 6793292-6793613,6795793-6795952,6796416-6796458,679... 28 5.6
01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547 28 5.6
11_06_0416 + 23307984-23308281,23310083-23310900 27 7.5
11_02_0106 - 8358372-8360120 27 9.9
09_03_0034 + 11751965-11752010,11752138-11752205,11753142-117532... 27 9.9
08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160 27 9.9
07_03_0592 + 19805647-19805817,19805960-19806332,19807347-19807474 27 9.9
06_03_0340 + 19703574-19704329 27 9.9
02_03_0120 + 15463163-15465250 27 9.9
>02_01_0158 - 1103461-1104186
Length = 241
Score = 50.0 bits (114), Expect = 1e-06
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEP 417
F DD ED+FVHQ++I + RS+ +GE VEFA+ E G +A VTGP G
Sbjct: 22 FISPDDGSEDLFVHQSSIKAD----GFRSLAEGEQVEFAISESEDGRTKAVDVTGPDGSF 77
Query: 418 VKG 426
VKG
Sbjct: 78 VKG 80
Score = 30.7 bits (66), Expect = 0.80
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 188 AEKVSGTVKWFNVKSGYGFIN 250
A + GTVKWFN G+GFI+
Sbjct: 4 AARHRGTVKWFNDTKGFGFIS 24
>08_01_0202 - 1638978-1639571
Length = 197
Score = 46.8 bits (106), Expect = 1e-05
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEP 417
F DD ED+FVHQ+++ + RS+ DG+ VEF+V +G G +A VT PGG
Sbjct: 21 FITPDDGGEDLFVHQSSLKSDG----YRSLNDGDVVEFSVGSGNDGRTKAVDVTAPGGGA 76
Query: 418 VK-GSPYAADKRRGY 459
+ GS + RGY
Sbjct: 77 LTGGSRPSGGGDRGY 91
Score = 33.9 bits (74), Expect = 0.086
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +2
Query: 188 AEKVSGTVKWFNVKSGYGFI 247
+E+V GTVKWF+ G+GFI
Sbjct: 3 SERVKGTVKWFDATKGFGFI 22
>03_06_0157 -
32039020-32039175,32039267-32039338,32039478-32039602,
32039678-32040559,32040623-32040692,32041248-32041739,
32041985-32042044,32042541-32042618,32043322-32044344
Length = 985
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 337 GEAVEFAVVAGEKGFEAAGVTGPGGEPVKG 426
GE+ E ++ GE E V GPGGEP G
Sbjct: 388 GESKEDEIIEGEPDPEMEVVAGPGGEPKVG 417
>04_04_1582 - 34590698-34591199,34593849-34594690
Length = 447
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 331 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 453
GDG E + G+KG G G GG KGS ++++ R
Sbjct: 229 GDGGVEEGSAGGGKKGGGGGGGGGGGGHGEKGSAKSSEQER 269
>03_01_0483 + 3689155-3689814
Length = 219
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +1
Query: 331 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRG 456
GDG A AG G +AA G G +PV+GS +D RG
Sbjct: 62 GDGGADPVRGSAG--GSDAARGDGGGADPVRGSAGGSDAARG 101
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 331 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRG 456
GDG + V G +AA G G +PV+GS +D RG
Sbjct: 81 GDGGGAD-PVRGSAGGSDAARGDGGGADPVRGSAGGSDAARG 121
>03_06_0609 -
35042276-35042388,35042476-35042527,35042624-35042725,
35043546-35043745,35045258-35045336,35045541-35045595,
35045947-35046122,35046386-35046988,35047077-35047265,
35048150-35048201,35048289-35048356,35048873-35048911,
35048912-35048970,35049639-35049782,35050136-35050238,
35050368-35050467,35050596-35050612
Length = 716
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 402 TSNTSCFKAFLPGNHGKLHRLSVADRAHSLTWVVTGDGSLMHK 274
T N ++ FLP G + L + D ++ W ++ + SL HK
Sbjct: 293 TENDCAWQRFLPS--GPIALLPIGDNYSNIVWTMSPEESLRHK 333
>08_02_0503 -
17848739-17849004,17849109-17849268,17849368-17849691,
17849787-17850209
Length = 390
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKG 426
D +D + + A A NP A R G +A + + + G++ AGV G VKG
Sbjct: 106 DIADDQVLVRVAAAALNPVDAKRRAGKFKATD-SPLPTVPGYDVAGVVVKAGRKVKG 161
>08_01_0229 + 1834102-1834358,1834442-1834901
Length = 238
Score = 27.9 bits (59), Expect = 5.6
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2
Query: 85 GVIGERRWWQRW 50
GV+GERR W+RW
Sbjct: 134 GVVGERRRWRRW 145
>05_02_0119 +
6793292-6793613,6795793-6795952,6796416-6796458,
6797015-6797335
Length = 281
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 376 GFEAAGVTGPGGEPVKGSPYAADKRRG 456
G EA G +GPGGE D RRG
Sbjct: 75 GVEAPGGSGPGGERTMAPANIDDSRRG 101
>01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547
Length = 388
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/38 (44%), Positives = 17/38 (44%)
Frame = +1
Query: 319 VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSP 432
VR G G A FAV G A G GGEP SP
Sbjct: 53 VRGGGGGGAALFAVPRLFVGLAAKRGAGDGGEPASRSP 90
>11_06_0416 + 23307984-23308281,23310083-23310900
Length = 371
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 547 GGPDVPNPSSAWSSXTALVRHLDEGNIGGGSHGACLQHKVSLXLAHH 407
G D + W S + HLD+ N+ G +G + K+SL A H
Sbjct: 72 GDGDDDGADAGWIS---IALHLDDPNVDGVRNGVRARFKISLLAAAH 115
>11_02_0106 - 8358372-8360120
Length = 582
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Frame = -3
Query: 525 PPLRGAPXPPSSATL----TREILAVVATALVCSIR 430
PPL AP PP +A L TR + A + + S+R
Sbjct: 4 PPLAAAPPPPPAAALVHHYTRLLFAAASASAAASLR 39
>09_03_0034 +
11751965-11752010,11752138-11752205,11753142-11753252,
11753626-11753712,11753800-11754008,11754653-11754926,
11756595-11757079,11758367-11758484,11758584-11758700,
11758779-11758925,11759061-11759135,11759198-11759266,
11759914-11760024,11760183-11760267,11760404-11760501,
11760628-11760720,11760806-11760880
Length = 755
Score = 27.1 bits (57), Expect = 9.9
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Frame = +1
Query: 238 WFHQQDDTKEDVFVHQTAIAR--NNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPG 408
W H Q D + F A A P A+ S G+G V GE+ V G G
Sbjct: 348 WLHAQGDLRARCFFSARAAAPLPECPALAIASAGNGNGNGAGGVGGEQRQRPVSVAGVG 406
>08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160
Length = 749
Score = 27.1 bits (57), Expect = 9.9
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Frame = +1
Query: 280 HQTAIARNNPRKAVRSVGDGEA----VEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADK 447
HQ + P+ S DG A +E + G E+ G G GG P +
Sbjct: 29 HQQHQHQLPPQATTTSESDGRAPRDELEMSKSGGSDNLESGGGGGGGGSGGDQDPNQRPR 88
Query: 448 RRGYHR 465
++ YHR
Sbjct: 89 KKRYHR 94
>07_03_0592 + 19805647-19805817,19805960-19806332,19807347-19807474
Length = 223
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +1
Query: 286 TAIARNNPRKAVRSVGDGEAVEFAVVAG 369
TAI N AV +VGD AV F V AG
Sbjct: 68 TAILINGETLAVANVGDSRAVAFDVRAG 95
>06_03_0340 + 19703574-19704329
Length = 251
Score = 27.1 bits (57), Expect = 9.9
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -2
Query: 541 PDVP-NPSSAWSSXTALVRHLDEGNIGGGSHGACLQHKVSLXLAHHRD 401
PD +P+SA S L DEG+ G HGA + K + LA R+
Sbjct: 148 PDAAADPASAAKSFLRLSDDEDEGSCSGSGHGAA-EDKCCVCLAGMRE 194
>02_03_0120 + 15463163-15465250
Length = 695
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +1
Query: 289 AIARNNPRKAVRSVGDGEAVEFAVVA--GEKGFEAAGVTGPGG 411
++ R N AV S GEA VA KGF++ V G GG
Sbjct: 357 SVRRKNQEHAVASEDMGEATLSMEVARAATKGFDSGNVIGVGG 399
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,455,632
Number of Sequences: 37544
Number of extensions: 248570
Number of successful extensions: 1131
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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