Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30857.Seq
(511 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 110 1e-25
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 110 1e-25
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 29 0.53
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 28 0.93
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 2.9
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 25 5.0
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.6
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 25 6.6
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 8.7
SPCC191.05c |||nucleoside 2-deoxyribosyltransferase |Schizosacch... 25 8.7
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 25 8.7
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 8.7
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 25 8.7
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 25 8.7
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 8.7
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 110 bits (264), Expect = 1e-25
Identities = 53/80 (66%), Positives = 60/80 (75%)
Frame = +3
Query: 15 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 194
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 195 TGRVYNVTAHALGVIVNKRV 254
TG VYNVT ++GV++ K V
Sbjct: 61 TGVVYNVTQSSVGVLIYKVV 80
Score = 103 bits (246), Expect = 2e-23
Identities = 48/75 (64%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Frame = +2
Query: 260 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 439
R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAKA GKTV L+RQPAPP AH VS
Sbjct: 83 RYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPATAHFVS 142
Query: 440 -GTEKPVLLAPIPYE 481
+PV L P+ Y+
Sbjct: 143 TENNEPVTLHPVAYD 157
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 110 bits (264), Expect = 1e-25
Identities = 53/80 (66%), Positives = 60/80 (75%)
Frame = +3
Query: 15 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 194
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 195 TGRVYNVTAHALGVIVNKRV 254
TG VYNVT ++GV++ K V
Sbjct: 61 TGVVYNVTQSSVGVLIYKVV 80
Score = 102 bits (245), Expect = 3e-23
Identities = 48/75 (64%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Frame = +2
Query: 260 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 439
R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAKA GKTV L+RQPAPP AH VS
Sbjct: 83 RYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPAKAHFVS 142
Query: 440 -GTEKPVLLAPIPYE 481
+PV L P+ Y+
Sbjct: 143 TENNEPVTLHPVAYD 157
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 28.7 bits (61), Expect = 0.53
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Frame = -1
Query: 454 GFLSSTDDVGSFRGSWLSLQVDGLAGSL-GFLQ*PL----ILFDSLKEVLSALGVLDMLN 290
GF S+T SF+G W+ L + + G L G LQ + +++SL EV ++ + L+
Sbjct: 445 GFASATILPMSFQGGWIDLPIAFILGCLVGILQHYIAPRSTMYNSLFEVTGSI-ITSFLS 503
Query: 289 TDIDALRYN 263
++RY+
Sbjct: 504 RAFGSIRYS 512
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 27.9 bits (59), Expect = 0.93
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 127 SPTLYTFMYVESGIVPCVRNLRANKSLVPRR*PLEFVIF 11
S L+ F+ + IVPC+ + + ++P R EF+ F
Sbjct: 743 SDILHIFLKLIHPIVPCISGVMLHSKIIPERKNSEFLSF 781
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 2.9
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +2
Query: 86 YSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPW 190
+ L H SW + R+ C +KGY PW
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.4 bits (53), Expect = 5.0
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +2
Query: 254 CGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 406
C + P I + K DF KR E +R+ +E A KTV L Q
Sbjct: 162 CSLVHPNDPAILALSKELQKKSDDFEKRESEKKRVAQEKVIAAKTVLLALQ 212
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 6.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 365 EAKAAGKTVNLKRQPAPPKAAHIVSGT 445
+ KA K + +QP+PP A H + T
Sbjct: 344 DTKAGEKLTDSSKQPSPPVAEHFSNET 370
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 25.0 bits (52), Expect = 6.6
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +3
Query: 273 SASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLPTSSVELRN 452
SAS S S++S+ S D ++ +R R RKP + +P+ + + P + T +
Sbjct: 56 SASRSPESIASSQSNDSAAIPSYRRKRRKVRKPEI-VKPTLRKRGRKPKNISTLEHDKSK 114
Query: 453 P 455
P
Sbjct: 115 P 115
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 24.6 bits (51), Expect = 8.7
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Frame = +3
Query: 87 IPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKV---YHGKTGRVYNVTAHALGVIVNKRVA 257
+ + TY+ V D+ +++ +G V + + + Y T ++ N LG+++ R +
Sbjct: 329 LAILTYL-VSPEADLNNMKSSGTVYFSVFNSLFFMYSKLTSKILNTLVGGLGILLTLRGS 387
Query: 258 EGLYRSASIS-VLSMS 302
EG + A I+ V+S++
Sbjct: 388 EGSFTVALIAQVISIA 403
>SPCC191.05c |||nucleoside 2-deoxyribosyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 211
Score = 24.6 bits (51), Expect = 8.7
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 385 LAGSLGFLQ*PLILFDSLKEVLSALGV 305
LAG L F + LFD LKE+ GV
Sbjct: 22 LAGDLVFRPNAIELFDELKEICKDAGV 48
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 24.6 bits (51), Expect = 8.7
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = -3
Query: 209 VHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSS 81
+ + C V H + T+ V N +H++ ERNS+
Sbjct: 83 IASLCFEDVIDTSHVSIKLTLPKCVLRSKNGLHYYAERERNST 125
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 24.6 bits (51), Expect = 8.7
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +3
Query: 294 SMSSTPSADKTSLRE 338
SMSS+P+A +TSLR+
Sbjct: 163 SMSSSPTASRTSLRK 177
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 24.6 bits (51), Expect = 8.7
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 332 KRVKENERLLK-EAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVL 460
K+ KE + LK E+ T + QP P SGTE V+
Sbjct: 269 KKKKEQKWTLKFESDKGTSTQCITHQPLPGSTPSFASGTENGVI 312
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 24.6 bits (51), Expect = 8.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 332 KRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKP 454
K +++ ER+ K + NL+R PPK + +E P
Sbjct: 83 KILRDEERIKKRKIQKNRAANLQRTLQPPKRPTPSAASEVP 123
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 24.6 bits (51), Expect = 8.7
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = -1
Query: 409 WLSLQVDGLAGSLGF 365
WL+++ DG++G +GF
Sbjct: 1085 WLAIRTDGISGLVGF 1099
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,098,180
Number of Sequences: 5004
Number of extensions: 42083
Number of successful extensions: 162
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -