Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30856.Seq
         (605 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    25   0.65 
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    25   0.65 
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   3.5  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   4.6  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   8.1  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   8.1  

>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 24.6 bits (51), Expect = 0.65
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 320 ASSADAGVQSWPXEVHPSCQNFDPAKAYSCP 412
           A   +A V  W  +V P C+N + A  ++CP
Sbjct: 129 AYDREARVCMWADQV-PECKNEEVAGGFTCP 158


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 24.6 bits (51), Expect = 0.65
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 320 ASSADAGVQSWPXEVHPSCQNFDPAKAYSCP 412
           A   +A V  W  +V P C+N + A  ++CP
Sbjct: 129 AYDREARVCMWADQV-PECKNEEVAGGFTCP 158


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +2

Query: 335 AGVQSWPXEVHPSCQNFDPAKAYSCPQAS 421
           AG+ SWP E      + +    + CP+ +
Sbjct: 148 AGICSWPDEAKKKGCSSEEVFQFECPKVN 176


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 314 LGASSADAGVQSWPXEVHPSCQNF 385
           L    A  GV+ +   VH  C NF
Sbjct: 289 LSGLKAPPGVEHFEDVVHKKCSNF 312


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 204 QEIVRR*CPSTSSGSYWVLDEKQMKLDYVLGLKIEDFLERR 326
           ++ V R   S +S  Y+VLDE    LD      +E+ L  +
Sbjct: 297 KDFVNRGNVSFNSLKYFVLDEADRMLDMGFLGDVEEMLSHQ 337


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 450 LDSGKHIDFSLKSPFRWRSXGRVKR 524
           LD G+H +FSL  P   +  G++ R
Sbjct: 72  LDLGRHENFSLFIPKHRKVAGKLIR 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,539
Number of Sequences: 336
Number of extensions: 2741
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)