Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30856.Seq
(605 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 149 3e-37
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 149 4e-37
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 31 0.099
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 27 1.6
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 27 2.8
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 3.7
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 25 8.6
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 149 bits (361), Expect = 3e-37
Identities = 71/99 (71%), Positives = 81/99 (81%)
Frame = +3
Query: 255 VLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIP 434
+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV KQ+VN+P
Sbjct: 85 ILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVP 144
Query: 435 SFIVRLDSGKHIDFSLKSPFRWRSXGRVKRXNLRXGXGG 551
SF+VRLD+ KHIDF+L SP+ GR KR LR GG
Sbjct: 145 SFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRLRSQEGG 183
Score = 131 bits (317), Expect = 7e-32
Identities = 60/80 (75%), Positives = 69/80 (86%)
Frame = +1
Query: 16 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 195
P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+E
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 196 KDPKRLFEGNALLRRLVRIG 255
KDPKRLFEGNA++RRLVR+G
Sbjct: 65 KDPKRLFEGNAIIRRLVRLG 84
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 149 bits (360), Expect = 4e-37
Identities = 71/100 (71%), Positives = 81/100 (81%)
Frame = +3
Query: 255 VLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIP 434
+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV KQ+VN+P
Sbjct: 85 ILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVP 144
Query: 435 SFIVRLDSGKHIDFSLKSPFRWRSXGRVKRXNLRXGXGGG 554
SF+VRLD+ KHIDF+L SP+ GR KR LR GG
Sbjct: 145 SFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLRSQQEGG 184
Score = 132 bits (318), Expect = 5e-32
Identities = 61/86 (70%), Positives = 72/86 (83%)
Frame = +1
Query: 16 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 195
P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+E
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 196 KDPKRLFEGNALLRRLVRIGYWMKNR 273
KDPKRLFEGNA++RRLVR+G ++R
Sbjct: 65 KDPKRLFEGNAIIRRLVRLGILDESR 90
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 31.5 bits (68), Expect = 0.099
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +3
Query: 255 VLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIP 434
+L K D + RRL + K +++ + A LI Q H+RV V+ P
Sbjct: 87 ILPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDP 146
Query: 435 SFIV 446
+++V
Sbjct: 147 AYLV 150
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 557 RSATXXXAEVLPLDTSXRPPPKWRFQREVNVL 462
R T V P ++ RPPPKW+ ++ V+
Sbjct: 519 RPRTIPLNGVAPYESELRPPPKWKPMPDLKVV 550
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 273 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 404
+++D L + +E FL++ TQ+ +A I + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = +2
Query: 302 D*GLLGASSADAGVQSWPXEVHPSCQNFDPAKAYSCPQASCEHP 433
D GLLGA+S GVQS P P P + P S P
Sbjct: 1521 DYGLLGAASPYKGVQS-PGYTSPFSSAMSPGYGLTSPSYSPSSP 1563
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 204 QEIVRR*CPSTSSGSYWVLDEKQMKLDYVLGLKIEDFLERR 326
+E +R S S + ++ EK M+LD V G K+E ++RR
Sbjct: 86 KETIRMDSQSEISSTMGLVGEK-MELDAVKGRKVESRVDRR 125
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,292
Number of Sequences: 5004
Number of extensions: 43769
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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