Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30856.Seq
(605 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 142 1e-34
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 142 1e-34
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 142 1e-34
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 83 1e-16
07_03_1357 - 25982861-25983068,25983354-25983361 59 3e-09
07_03_1358 - 25984897-25984997,25985623-25985650 47 1e-05
04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028 32 0.31
02_05_1008 - 33461225-33462334 29 2.2
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133... 29 3.8
06_01_0324 - 2357432-2357724,2358042-2358105,2358321-2358404,235... 29 3.8
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906... 28 5.0
08_02_0531 + 18256597-18256836,18257637-18257735,18258038-182581... 27 8.7
08_02_0251 - 14776308-14776495,14777624-14777708,14779125-147791... 27 8.7
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 142 bits (345), Expect = 1e-34
Identities = 69/102 (67%), Positives = 81/102 (79%)
Frame = +3
Query: 249 YWVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 428
Y +L + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LIRQRHIRV +Q+VN
Sbjct: 85 YGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVN 144
Query: 429 IPSFIVRLDSGKHIDFSLKSPFRWRSXGRVKRXNLRXGXGGG 554
IPSF+VR++S KHIDFSL SPF GRVKR N + GGG
Sbjct: 145 IPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKKASGGG 186
Score = 115 bits (276), Expect = 3e-26
Identities = 51/77 (66%), Positives = 64/77 (83%)
Frame = +1
Query: 25 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 204
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 69
Query: 205 KRLFEGNALLRRLVRIG 255
+R+FEG ALLRR+ R G
Sbjct: 70 RRIFEGEALLRRMNRYG 86
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 142 bits (345), Expect = 1e-34
Identities = 69/102 (67%), Positives = 81/102 (79%)
Frame = +3
Query: 249 YWVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 428
Y +L + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LIRQRHIRV +Q+VN
Sbjct: 108 YGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVN 167
Query: 429 IPSFIVRLDSGKHIDFSLKSPFRWRSXGRVKRXNLRXGXGGG 554
IPSF+VR++S KHIDFSL SPF GRVKR N + GGG
Sbjct: 168 IPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKKASGGG 209
Score = 113 bits (273), Expect = 8e-26
Identities = 51/75 (68%), Positives = 63/75 (84%)
Frame = +1
Query: 31 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 210
KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P+R
Sbjct: 35 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRR 94
Query: 211 LFEGNALLRRLVRIG 255
+FEG ALLRR+ R G
Sbjct: 95 IFEGEALLRRMNRYG 109
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 142 bits (345), Expect = 1e-34
Identities = 69/102 (67%), Positives = 81/102 (79%)
Frame = +3
Query: 249 YWVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 428
Y +L + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LIRQRHIRV +Q+VN
Sbjct: 301 YGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVN 360
Query: 429 IPSFIVRLDSGKHIDFSLKSPFRWRSXGRVKRXNLRXGXGGG 554
IPSF+VR++S KHIDFSL SPF GRVKR N + GGG
Sbjct: 361 IPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKKASGGG 402
Score = 115 bits (276), Expect = 3e-26
Identities = 51/77 (66%), Positives = 64/77 (83%)
Frame = +1
Query: 25 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 204
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 226 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 285
Query: 205 KRLFEGNALLRRLVRIG 255
+R+FEG ALLRR+ R G
Sbjct: 286 RRIFEGEALLRRMNRYG 302
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 83.4 bits (197), Expect = 1e-16
Identities = 42/77 (54%), Positives = 54/77 (70%)
Frame = +1
Query: 25 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 204
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV +ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRV-----------QELLTLDEKNP 58
Query: 205 KRLFEGNALLRRLVRIG 255
+R+FEG ALLR + R G
Sbjct: 59 RRIFEGEALLRHMNRYG 75
Score = 68.5 bits (160), Expect = 4e-12
Identities = 33/52 (63%), Positives = 38/52 (73%)
Frame = +3
Query: 249 YWVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 404
Y +L E Q KLDYVL L +E+FL+ RLQT VFK G KSIHH +LIRQ HI
Sbjct: 74 YGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHVLIRQHHI 125
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 58.8 bits (136), Expect = 3e-09
Identities = 30/50 (60%), Positives = 34/50 (68%)
Frame = +3
Query: 405 RVRKQVVNIPSFIVRLDSGKHIDFSLKSPFRWRSXGRVKRXNLRXGXGGG 554
RV +Q+VNIPSFIVRL+S KHI FSL SP RVKR N + GGG
Sbjct: 3 RVGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKNQKASGGGG 52
>07_03_1358 - 25984897-25984997,25985623-25985650
Length = 42
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +1
Query: 25 FSKTYVTPRRPFEKARLDQELKIIGEYG 108
+ KT+ PRRP+EK RLD ELK++GEYG
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYG 37
>04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028
Length = 157
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 321 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 446
RRL T + K A+ + A I+Q H+RV + V P+F+V
Sbjct: 82 RRLATVMVKLKFAEHLKEAVTYIQQGHVRVGPETVTDPAFLV 123
>02_05_1008 - 33461225-33462334
Length = 369
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/76 (28%), Positives = 41/76 (53%)
Frame = +3
Query: 243 GSYWVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQV 422
G Y E Q+ L+Y+ G +E RR+ ++ F A +A+ + + +RHI V + +
Sbjct: 156 GMYEQAGELQILLEYMDGGSLEG---RRIASEAFLADVARQVLSGIAYLHRRHI-VHRDI 211
Query: 423 VNIPSFIVRLDSGKHI 470
PS ++ +DSG+ +
Sbjct: 212 K--PSNLL-IDSGRRV 224
>10_06_0085 +
10511258-10512327,10512978-10513058,10513318-10513396,
10514160-10514201
Length = 423
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 303 IEDFLERRLQTQVFKAGLAKSIHHAR 380
+ED+ E L T F A L KS+H AR
Sbjct: 110 VEDYFEGSLHTLDFLAALDKSLHRAR 135
>06_01_0324 -
2357432-2357724,2358042-2358105,2358321-2358404,
2358638-2358715,2359298-2359360,2359459-2359561,
2359675-2359800,2360212-2360258,2361284-2361388,
2361483-2361605,2361759-2361854,2362052-2362141,
2362759-2362815,2362899-2363028,2363613-2363708,
2363815-2363875,2364391-2364490
Length = 571
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 320 ASSADAGVQSWPXEVHPSCQNFDPAKAYSCPQASCEHPIIYCA 448
A+S G SW CQ++DPAK Y+ Q H I+ A
Sbjct: 394 AASLVKGNLSWRSREFLDCQSYDPAKVYNFIQTGV-HGRIFAA 435
>01_06_0939 -
33188620-33189252,33189570-33189680,33190460-33190668,
33190781-33191078
Length = 416
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 79 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 201
Q L+ I G+ + +E++ + +L RIR R LT+E D
Sbjct: 212 QRLQTIHLLGIDDNQEIFTTQTSLTRIRAVPRYSLTIESLD 252
>08_02_0531 +
18256597-18256836,18257637-18257735,18258038-18258184,
18258295-18258427,18258521-18258585,18258792-18258962,
18259095-18259199,18259495-18259602,18259792-18260088,
18260191-18260256,18260477-18260679,18261178-18261232,
18261318-18261503,18261701-18261985
Length = 719
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +1
Query: 58 FEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAR----ELLTLE 192
FE A+ ++ KII E R+ ++ +KY LA A ELL L+
Sbjct: 394 FEMAKQEESKKIISEEHQRSNEQITDLKYKLANCMNALESKNLELLNLQ 442
>08_02_0251 -
14776308-14776495,14777624-14777708,14779125-14779160,
14779930-14780177,14780670-14780901,14781159-14781937,
14781987-14782155
Length = 578
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = -2
Query: 136 RAILHACCGDRTLR*SSTLGQDVPFQKDDEVSRTSLKIPTVLC 8
R I+H C + T R LG D DE S S K LC
Sbjct: 265 REIIHCCADETTKRIIEELGDDYYAILADECSDLSYKEQLALC 307
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,729,657
Number of Sequences: 37544
Number of extensions: 321136
Number of successful extensions: 735
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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