Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30856.Seq
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.3  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   4.1  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   4.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   9.4  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 83  SWSRRAFSKGRRGVTYVFENTDGTL 9
           S++  + S  +  +TYV++N +GTL
Sbjct: 201 SFAIESISYEQTAITYVWKNDEGTL 225


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 83  SWSRRAFSKGRRGVTYVFENTDGTL 9
           S++  + S  +  +TYV++N +GTL
Sbjct: 201 SFAIESISYEQTAITYVWKNDEGTL 225


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 83  SWSRRAFSKGRRGVTYVFENTDGTL 9
           S++  + S  +  +TYV++N +GTL
Sbjct: 252 SFAIESISYEQTAITYVWKNDEGTL 276


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 83  SWSRRAFSKGRRGVTYVFENTDGTL 9
           S++  + S  +  +TYV++N +GTL
Sbjct: 201 SFAIESISYEQTAITYVWKNDEGTL 225


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -3

Query: 297 DQAHNRVSSVFHPVPNTNQ 241
           D  HN + ++F  + +TN+
Sbjct: 53  DNVHNHIQNIFKIIKSTNE 71


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -3

Query: 297 DQAHNRVSSVFHPVPNTNQ 241
           D  HN + ++F  + +TN+
Sbjct: 36  DNVHNHIQNIFKIIKSTNE 54


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 247 EPDDVEGHYLRTISWG 200
           +PD  E  Y+RT+S G
Sbjct: 271 QPDTPEEKYIRTLSKG 286


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,981
Number of Sequences: 438
Number of extensions: 3179
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)