Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30856.Seq
(605 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri... 143 7e-35
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri... 143 9e-35
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei... 32 0.26
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim... 29 2.4
At5g41310.1 68418.m05020 kinesin motor protein-related 29 3.2
At1g43730.1 68414.m05028 hypothetical protein 29 3.2
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si... 29 3.2
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 28 4.2
At5g28615.1 68418.m03493 hypothetical protein 28 4.2
At5g01850.1 68418.m00104 protein kinase, putative similar to pro... 28 5.5
At1g60720.1 68414.m06835 hypothetical protein 28 5.5
At1g02020.2 68414.m00122 nitroreductase family protein contains ... 28 5.5
At1g02020.1 68414.m00121 nitroreductase family protein contains ... 28 5.5
At5g35460.1 68418.m04217 expressed protein 27 7.3
At4g32190.1 68417.m04581 centromeric protein-related low similar... 27 7.3
At5g18880.1 68418.m02243 expressed protein ; expression supporte... 27 9.6
At4g15880.1 68417.m02413 Ulp1 protease family protein contains P... 27 9.6
>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
Length = 197
Score = 143 bits (347), Expect = 7e-35
Identities = 69/98 (70%), Positives = 81/98 (82%)
Frame = +3
Query: 249 YWVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 428
Y +LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHHAR+LIRQRHIRV +Q+VN
Sbjct: 85 YGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGRQLVN 144
Query: 429 IPSFIVRLDSGKHIDFSLKSPFRWRSXGRVKRXNLRXG 542
IPSF+VR++S KH+DFSL SPF GRVKR N R G
Sbjct: 145 IPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNERAG 182
Score = 123 bits (296), Expect = 1e-28
Identities = 57/85 (67%), Positives = 70/85 (82%)
Frame = +1
Query: 1 VNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAREL 180
VN R + KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+YTL+RIR AAREL
Sbjct: 2 VNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAAREL 61
Query: 181 LTLEEKDPKRLFEGNALLRRLVRIG 255
LTL+EK+P+R+FEG ALLRR+ R G
Sbjct: 62 LTLDEKNPRRIFEGEALLRRMNRYG 86
>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
Length = 198
Score = 143 bits (346), Expect = 9e-35
Identities = 69/94 (73%), Positives = 79/94 (84%)
Frame = +3
Query: 249 YWVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 428
Y +LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHH+R+LIRQRHIRV KQ+VN
Sbjct: 85 YGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGKQLVN 144
Query: 429 IPSFIVRLDSGKHIDFSLKSPFRWRSXGRVKRXN 530
IPSF+VRLDS KHIDF+L SPF GRVKR N
Sbjct: 145 IPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRN 178
Score = 122 bits (293), Expect = 2e-28
Identities = 53/77 (68%), Positives = 67/77 (87%)
Frame = +1
Query: 25 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 204
+ KT+ PRRP+EK RLD ELK++GEYGLRNKRE+WRV+Y+L+RIR AAR+LLTL+EK P
Sbjct: 10 YGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSP 69
Query: 205 KRLFEGNALLRRLVRIG 255
+R+FEG ALLRR+ R G
Sbjct: 70 RRIFEGEALLRRMNRYG 86
>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
40S RIBOSOMAL PROTEINs - different species
Length = 182
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 297 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 446
L + F RRL T + A+ A I Q H+RV + + P+F+V
Sbjct: 99 LSVSSFCRRRLSTVLVHLKFAEHHKEAVTYIEQGHVRVGPETITDPAFLV 148
>At5g41240.1 68418.m05011 glutathione S-transferase, putative
similar to glutathione S-transferase, GST 10b
GB:CAA10662 [Arabidopsis thaliana] 37349.
Length = 591
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 252 WVLDEKQMKLDYVLGLKIEDFLERRLQTQ 338
WVLDE++ +D LG+K ER++ T+
Sbjct: 478 WVLDEEEQVMDLPLGVKSSKQKERKVATK 506
>At5g41310.1 68418.m05020 kinesin motor protein-related
Length = 961
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 331 RRRCSKLAXRSPSIMPEF*SGKGIFVSASKL*TSHH 438
RRR S A S + F G F+ AS++ TSHH
Sbjct: 141 RRRWSLPADHSKGVDSNFNDGGSQFIEASEINTSHH 176
>At1g43730.1 68414.m05028 hypothetical protein
Length = 320
Score = 28.7 bits (61), Expect = 3.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 387 SKFWHDGWTSXGQL 346
+KFWHD WT G L
Sbjct: 77 AKFWHDNWTGHGPL 90
>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
similar to chloroplast membrane protein (ALBINO3)
(GI:3927828) [Arabidopsis thaliana]
Length = 1013
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 31 KTYVTPRR-PFEKARLDQ-ELKIIGEYGLRNKREVWRVKYT 147
K ++ PRR P + Q E K EYG RN E W + T
Sbjct: 479 KYFIKPRRHPESECSATQTEYKFTSEYGKRNSSECWAMTTT 519
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 269 TDETRLCAWSED*GLLGASSADAGVQSW 352
T E CAWS LL + S DA + W
Sbjct: 265 TSEVCACAWSPSASLLASGSGDATARIW 292
>At5g28615.1 68418.m03493 hypothetical protein
Length = 149
Score = 28.3 bits (60), Expect = 4.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 387 SKFWHDGWTSXGQL 346
+KFWHD WT G L
Sbjct: 9 AKFWHDDWTGLGPL 22
>At5g01850.1 68418.m00104 protein kinase, putative similar to
protein kinase [Arabidopsis thaliana]
gi|1054633|emb|CAA63387; contains protein kinase domain,
Pfam:PF00069
Length = 333
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -1
Query: 488 RFQREVNVLARVQAHN 441
RF REVN+++RVQ HN
Sbjct: 62 RFVREVNMMSRVQHHN 77
>At1g60720.1 68414.m06835 hypothetical protein
Length = 289
Score = 27.9 bits (59), Expect = 5.5
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -3
Query: 381 FWHDGWTSXGQL 346
FWHD WTS G L
Sbjct: 25 FWHDSWTSLGPL 36
>At1g02020.2 68414.m00122 nitroreductase family protein contains
Pfam PF00881: nitroreductase family protein profile;
contains Prosite PS00343: Gram-positive cocci surface
proteins 'anchoring' hexapeptide
Length = 543
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 338 GVQSWPXEVHPSCQNFDPAKAY 403
G +WP V+PS N P +AY
Sbjct: 164 GSSTWPLRVNPSSGNLHPTEAY 185
>At1g02020.1 68414.m00121 nitroreductase family protein contains
Pfam PF00881: nitroreductase family protein profile;
contains Prosite PS00343: Gram-positive cocci surface
proteins 'anchoring' hexapeptide
Length = 642
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 338 GVQSWPXEVHPSCQNFDPAKAY 403
G +WP V+PS N P +AY
Sbjct: 164 GSSTWPLRVNPSSGNLHPTEAY 185
>At5g35460.1 68418.m04217 expressed protein
Length = 381
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = -1
Query: 596 IYXWXY*LPL---HXWRSATXXXAEVLPLDTSXRPPPKWRFQREVNVLARVQAHNK*WDV 426
++ W + +PL W+ VL R P RE++ A +A+NK W +
Sbjct: 221 LFTWLFLVPLVVYTLWQVLYFLIVNVLRRQRLLRDPEVMTSYRELSKKAE-KANNKLWQL 279
Query: 425 HNLLADTN 402
LL D N
Sbjct: 280 SGLLGDQN 287
>At4g32190.1 68417.m04581 centromeric protein-related low similarity
to SP|Q02224 Centromeric protein E (CENP-E protein)
{Homo sapiens}
Length = 783
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 100 EYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRL 243
+YG+ NKR V + +T +R E+L ++ + E N ++ RL
Sbjct: 599 DYGMENKRLVMELSFTRENLRMKEMEVLAVQRALTFKDEEINVVMGRL 646
>At5g18880.1 68418.m02243 expressed protein ; expression supported
by MPSS
Length = 295
Score = 27.1 bits (57), Expect = 9.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 387 SKFWHDGWTSXGQL*T 340
+ FW+D WT GQL T
Sbjct: 22 ASFWYDAWTDFGQLLT 37
>At4g15880.1 68417.m02413 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; low similarity to
sentrin/SUMO-specific protease [Homo sapiens]
GI:6906859; identical to cDNA hypothetical protein,
partial (1189 bp) GI:2326349
Length = 489
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 16 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREV 129
P K PR PF D+E ++ + RN+R+V
Sbjct: 242 PKTVEKRVEVPREPFIPLTEDEEAEVYRAFSGRNRRKV 279
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,219,390
Number of Sequences: 28952
Number of extensions: 245164
Number of successful extensions: 636
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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