Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30855.Seq
(628 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|... 125 6e-30
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12... 125 6e-30
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c... 27 2.2
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 26 5.1
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 5.1
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 25 6.8
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 25 9.0
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 25 9.0
>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 125 bits (301), Expect = 6e-30
Identities = 60/102 (58%), Positives = 79/102 (77%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
KDWKGL++TV+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I
Sbjct: 51 KDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEII 110
Query: 432 GIAKIMRNXSMARYLSGXSKRGFLGTHSSVGMYCGGAGPPHD 557
+A+ MR S+A+ LSG K LGT SVG G PHD
Sbjct: 111 EVARTMRFKSLAKELSGTVKE-ILGTAFSVGCTVDGKN-PHD 150
Score = 88.6 bits (210), Expect = 6e-19
Identities = 39/51 (76%), Positives = 45/51 (88%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATR 255
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT+
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATK 51
>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 125 bits (301), Expect = 6e-30
Identities = 60/102 (58%), Positives = 79/102 (77%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
KDWKGL++TV+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I
Sbjct: 51 KDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEII 110
Query: 432 GIAKIMRNXSMARYLSGXSKRGFLGTHSSVGMYCGGAGPPHD 557
+A+ MR S+A+ LSG K LGT SVG G PHD
Sbjct: 111 EVARTMRFKSLAKELSGTVKE-ILGTAFSVGCTVDGKN-PHD 150
Score = 88.6 bits (210), Expect = 6e-19
Identities = 39/51 (76%), Positives = 45/51 (88%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATR 255
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT+
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATK 51
>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 297
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = -2
Query: 606 LXIQWSKPPLXMSSNKN----HVAALPLHSTSQLNC 511
L +W PPL +S+++N H A L L +T +L C
Sbjct: 207 LRSEWKGPPLDLSNDENRHLLHPAELQLAATLRLPC 242
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 383 LFTVTRRLLKGSDDKGCCRGNNSYLGLSVLNCQLHS 276
+FT+ R LK + CR N + GLS C +S
Sbjct: 805 VFTLPRNNLKSKTNTKKCRDNLNLSGLSSSTCNANS 840
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -1
Query: 601 HPMVKTPAXDVIK*ESCGGPAPPQYIPTELCV 506
HP+++ PA ++ PA P Y P + V
Sbjct: 312 HPVLQPPAPSTLQFNPSPSPAAPSYPPVDASV 343
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 269 ETLPVLVALAMSSPTFLGDRPRGPILGAKDDVAP 168
E +PV ++ SP L D R +L ++AP
Sbjct: 1017 ELIPVFASVLTGSPEQLNDELRSELLSMVKEIAP 1050
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.0 bits (52), Expect = 9.0
Identities = 8/24 (33%), Positives = 12/24 (50%)
Frame = +2
Query: 404 RQHLP*RCNRHCEDHEKQXNGPVP 475
+ H+ +C HC H + PVP
Sbjct: 162 KTHIDHKCKEHCSCHHDKFPRPVP 185
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 182 DDVAPTSPPTHRKFTILI 129
D++A T PP HRK IL+
Sbjct: 249 DELAKTLPPYHRKNLILV 266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,263
Number of Sequences: 5004
Number of extensions: 53782
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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