Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30855.Seq
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1026 + 30214437-30214937 135 3e-32
02_05_0416 + 28791512-28792012 131 4e-31
09_06_0006 + 20149326-20149646,20149750-20149824 31 0.75
06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414 31 0.99
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424... 29 4.0
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488... 29 4.0
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545... 28 7.0
07_03_0369 - 17356806-17356934,17357145-17357278,17357989-173582... 28 7.0
06_03_1069 - 27345207-27345488,27345746-27346078,27346252-273470... 28 7.0
07_03_0574 - 19629875-19631032 27 9.2
>04_04_1026 + 30214437-30214937
Length = 166
Score = 135 bits (326), Expect = 3e-32
Identities = 67/99 (67%), Positives = 81/99 (81%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
KDWKGL++TV+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI
Sbjct: 52 KDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVI 111
Query: 432 GIAKIMRNXSMARYLSGXSKRGFLGTHSSVGMYCGGAGP 548
IA+IMRN SMA+ ++G K LGT SVG G P
Sbjct: 112 EIARIMRNRSMAKEMAGTVKE-ILGTCVSVGCTVDGKDP 149
Score = 79.8 bits (188), Expect = 2e-15
Identities = 36/50 (72%), Positives = 41/50 (82%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKAT 252
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKET 50
>02_05_0416 + 28791512-28792012
Length = 166
Score = 131 bits (317), Expect = 4e-31
Identities = 65/99 (65%), Positives = 80/99 (80%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
KDWKGL++TV+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI
Sbjct: 52 KDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVI 111
Query: 432 GIAKIMRNXSMARYLSGXSKRGFLGTHSSVGMYCGGAGP 548
IA++MR SMA+ ++G K LGT SVG G P
Sbjct: 112 EIARVMRPRSMAKEMAGTVKE-ILGTCVSVGCTVDGKDP 149
Score = 79.8 bits (188), Expect = 2e-15
Identities = 36/50 (72%), Positives = 41/50 (82%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKAT 252
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKET 50
>09_06_0006 + 20149326-20149646,20149750-20149824
Length = 131
Score = 31.1 bits (67), Expect = 0.75
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +3
Query: 363 PPRDRKKQKNIKHNGNISLEDVIGIAKIMRNXSMARYLSGXSKRGFLGTHSSVGMYCGGA 542
P D ++++ I +G E+V G + + R + +RG G S+ CGGA
Sbjct: 14 PASDAREEEGIVSSGRWPEEEVAGERRADA-AELGRATAAPMRRGAAGGGSARAWLCGGA 72
Query: 543 GP 548
GP
Sbjct: 73 GP 74
>06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414
Length = 522
Score = 30.7 bits (66), Expect = 0.99
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 240 CQGHKDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQ 386
C W + V V + + V+P+A A +IRA+ + P R++Q
Sbjct: 27 CAAQGYWYSYLVDVDADVDDDMISLRVLPNARAALIRAVADAPGRREEQ 75
>04_04_1574 - 34536744-34537136,34541247-34541405,34541497-34542411,
34543642-34543731,34544324-34544390,34544483-34544676,
34544770-34545510,34545596-34545661,34545783-34545908,
34545978-34546073,34546153-34546521,34546602-34546724,
34546802-34546906,34547394-34547531,34547665-34547760,
34548018-34548275
Length = 1311
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -1
Query: 256 SLWPWQCHHPPF*ETDQEDRF*GPKMMWHRLPRRHIA 146
S+W C H P+ E D E R GP L R I+
Sbjct: 1181 SMWMLNCRHQPYREEDGELRIVGPPHQHAHLKRVRIS 1217
>04_04_1551 -
34348110-34348225,34348468-34348606,34348658-34348896,
34349042-34349140,34349207-34350188,34350737-34350832,
34350936-34351064,34351253-34351332,34351420-34351661,
34351743-34352692
Length = 1023
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 142 NLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATRTG 261
N +C G E G S AP++ PLG+ PK G+ IA + G
Sbjct: 736 NSKCAGAE-GINS--APRVTPLGIRPKG-GESIAPSLALG 771
>11_01_0669 -
5454116-5454153,5454569-5454770,5454865-5455029,
5455278-5456183
Length = 436
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 100 KMPPK-FDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKV 228
K+P + F N +KIV ++C G EV +G G+ +K+
Sbjct: 369 KIPEEPFVSNHLKIVEIKCKGKEVMWVCKFLKTLGTFGIPLEKI 412
>07_03_0369 -
17356806-17356934,17357145-17357278,17357989-17358247,
17358322-17358410,17358644-17358794,17358889-17359032,
17359358-17359477,17359595-17359769,17359842-17360215
Length = 524
Score = 27.9 bits (59), Expect = 7.0
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 327 SAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNXSMARYLSGXSKRGFLG 506
SAA +IRAL PRD + + +G++ + + + + SMA SG S LG
Sbjct: 53 SAAVGLIRALNLHPRDASPSPSSRGDGDVPAGTL--VERPIHLASMATGKSGGSSAEDLG 110
Query: 507 THS 515
H+
Sbjct: 111 HHA 113
>06_03_1069 -
27345207-27345488,27345746-27346078,27346252-27347041,
27347153-27347351,27347522-27347667,27347823-27348094,
27348161-27348262,27348351-27348470,27348576-27348729,
27348986-27349114,27349554-27349900
Length = 957
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -2
Query: 120 VKLRGHFVDYLVQLYTIITLNPNGWVWIPQ 31
V LR H L L + +P W+WI Q
Sbjct: 81 VSLRSHLASVLQSLSQVRPRSPASWIWISQ 110
>07_03_0574 - 19629875-19631032
Length = 385
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 436 MPITSSREMLPLCLIFFCFLRSRG-GSLRALMIRAAAEGTTAIW 308
+P E++P C ++F F R+ G SL A + AA +W
Sbjct: 247 LPFAGKAELVPGCNLWFGFSRADGSSSLCAADLAAAPHRACGVW 290
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,920,458
Number of Sequences: 37544
Number of extensions: 408946
Number of successful extensions: 1051
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -