Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30855.Seq
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)             138   3e-33
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.58 
SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08)                    31   1.0  
SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)              29   3.1  
SB_42549| Best HMM Match : Peptidase_A17 (HMM E-Value=1e-35)           28   7.1  
SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)                     27   9.4  

>SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score =  138 bits (334), Expect = 3e-33
 Identities = 69/102 (67%), Positives = 82/102 (80%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
           +DWKGLKITV LT+QNRQA+++VVPSA++LII+ALKEPPRDRKK KNIKHNGNI+L+DV 
Sbjct: 51  QDWKGLKITVCLTIQNRQAKVSVVPSASSLIIKALKEPPRDRKKVKNIKHNGNITLDDVT 110

Query: 432 GIAKIMRNXSMARYLSGXSKRGFLGTHSSVGMYCGGAGPPHD 557
            +AK+MR  SMAR+LSG  K   LGT  SVG    G   PHD
Sbjct: 111 NVAKVMRPRSMARHLSGTVKE-ILGTCQSVGCTVDGMA-PHD 150



 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 45/51 (88%), Positives = 48/51 (94%)
 Frame = +1

Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATR 255
           MPPKFDPNEI+ V LRC GGEVGAT+SLAPKIGPLGLSPKKVGDDIAKAT+
Sbjct: 1   MPPKFDPNEIQYVYLRCTGGEVGATASLAPKIGPLGLSPKKVGDDIAKATQ 51


>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1569

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = -3

Query: 377 TVTRRLLKGSDDKGCC-----RGNNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTFLGD 213
           +++  +  GSD+K CC      G  + LG+  +   +HSD++  P+L  LA     F+ +
Sbjct: 108 SLSSSMFTGSDNKLCCFFLGQDGEKAMLGIVYVLTHVHSDIQFCPLLPVLAALFLHFMDE 167

Query: 212 R 210
           R
Sbjct: 168 R 168


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 23/61 (37%), Positives = 28/61 (45%)
 Frame = -3

Query: 350  SDDKGCCRGNNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTFLGDRPRGPILGAKDDVA 171
            SD+K C R       LS L      ++ TL  L      S TF   +P GP+ G K DVA
Sbjct: 924  SDEKRCIRAF-----LSSLRNPSDDEVLTLMALPIFEAISGTFTAVQPDGPLRGEKLDVA 978

Query: 170  P 168
            P
Sbjct: 979  P 979


>SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08)
          Length = 924

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = +3

Query: 249 HKDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLED- 425
           H DWK L   +++++ + QA   V+P    + +R   E    +++ +   H   +  ED 
Sbjct: 606 HSDWKSLGNYLRISLPSNQA--TVIPLGHDMTVREAVESTCQKRQLEPRAHYLRLGKEDN 663

Query: 426 --VIGIAKIMRNXSM 464
             VIGI+   RN ++
Sbjct: 664 NGVIGISVTCRNDAL 678


>SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)
          Length = 302

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 270 KITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKH 401
           ++ ++     RQ +   +PSA    IR  +E PR  +K  N+KH
Sbjct: 97  RVIIRAVGSRRQVEPLPLPSALKEWIREYEEEPRFDRKLTNLKH 140


>SB_42549| Best HMM Match : Peptidase_A17 (HMM E-Value=1e-35)
          Length = 1595

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
 Frame = +3

Query: 327 SAAALIIRALKEPPRDRKKQKNIKHNGNI-SLEDVIGIAKIMRNXSMARYLSG---XSKR 494
           SAA +I R L+EP   R+ Q N  H+ +   L D     KI R  S  R+ S       R
Sbjct: 200 SAAQVIQRILEEPDDPRENQSNNPHDQSTRPLSD-----KIPREESAVRFPSDSPPQRSR 254

Query: 495 GFLGTHSSVGMYCGGAGPP 551
             L TH  V       G P
Sbjct: 255 NSLPTHLYVNTTAQATGTP 273


>SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)
          Length = 646

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 121 PNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVG 231
           P+     +L+C G E   TSS+ P +G LG   K  G
Sbjct: 597 PSMTNTTSLKCQGDEKSGTSSITP-LGSLGTYDKSHG 632


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,646,307
Number of Sequences: 59808
Number of extensions: 422006
Number of successful extensions: 910
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)