Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30854.Seq
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 32 0.073
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe... 27 2.1
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 2.1
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 27 2.1
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.7
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 27 2.7
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 26 3.6
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 26 4.8
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 8.4
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 31.9 bits (69), Expect = 0.073
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +1
Query: 103 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN 219
N D KFP K+P F DG L+E+ AIA+Y+A+
Sbjct: 38 NFPADLAAKFPLQKMPVFVGKDG-FPLSETLAIAFYLAS 75
Score = 30.3 bits (65), Expect = 0.22
Identities = 17/66 (25%), Positives = 36/66 (54%)
Frame = +3
Query: 252 SRVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFL 431
++V Q+ S+++SEL A + P + +++Q + A++ + D L ++T+L
Sbjct: 91 AKVLQYCSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTYL 150
Query: 432 VXERIT 449
V R+T
Sbjct: 151 VGSRLT 156
>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 27.1 bits (57), Expect = 2.1
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 97 ETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANESLRG-GDLATQAVSGSGH 273
ET K + K AG+ P ADGK +L S I Y+ E+L G TQA++ S
Sbjct: 134 ETGKRFEIQVK-GAGRTPYSRFADGKAVLRSS--IREYLCCEALYALGIPTTQALAISNL 190
Query: 274 HGLTA 288
G+ A
Sbjct: 191 EGVVA 195
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +1
Query: 10 PENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTE 189
P F++ KA + QY+ +FG +K ++F K+ ++ F S + +L+
Sbjct: 553 PNYFKSLKAELNRQYAAAVNSGTRPLLFGSLSKYQNFTKEKLESEIVRF-SFEHSILINT 611
Query: 190 SN 195
SN
Sbjct: 612 SN 613
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 109 SEDFLKKFPAGKVPAFESADGKVLLTESNAIAYY 210
S D KFP K+P F ADG L+E AI Y
Sbjct: 40 SADLAAKFPLQKLPVFIGADG-FELSEVIAIVKY 72
>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 547 PNAETFISDETDAGCSHVLKSMQQCTEDNDHRQV 446
P+ +F+S + S KS+ QCT+D + R +
Sbjct: 162 PSKPSFLSSSVSSPASSKQKSLFQCTKDLEKRYI 195
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 376 TYWPP*KYWTDIFSHAPSLLXRESLVD 456
TY PP Y D+FS APS+ + +
Sbjct: 257 TYLPPFNYDHDVFSFAPSVASADQFTE 283
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 179 STFPSALSNAGTFPAGNFFKKSSDL 105
+TFP A + GTFP G F S L
Sbjct: 52 ATFPWAQAPVGTFPIGQLFDPVSGL 76
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 268 GHHGLTANYCLLPALGSSLTLV--SCNSTN-RMLNVQSL 375
GH L + C P++GSS L+ +C N R+ V++L
Sbjct: 213 GHTDLIRDICWAPSMGSSYYLIATACKDGNVRIFKVETL 251
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 328 LVSCNSTNRMLNVQSLTYWPP*KYWTDIFSHAPSLLXRESLV 453
LV C + N ML +L Y P KY I ++ S + R SL+
Sbjct: 960 LVRCIAFNLMLQAGALKYTPLIKYIFYILTNDLSPVVRRSLL 1001
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,772
Number of Sequences: 5004
Number of extensions: 53031
Number of successful extensions: 163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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