Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30854.Seq
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07) 78 5e-15
SB_47549| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14) 31 0.93
SB_13066| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_51105| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9) 29 3.8
SB_45214| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_40685| Best HMM Match : NPIP (HMM E-Value=1.8) 27 8.7
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
Length = 203
Score = 78.2 bits (184), Expect = 5e-15
Identities = 37/71 (52%), Positives = 47/71 (66%)
Frame = +1
Query: 1 YTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVL 180
YTYP++FRA K LIAA+YSGT ++V P F FG+ N + +FLKKFP GKVPAFE+
Sbjct: 7 YTYPDSFRAQKILIAAEYSGTKIEV-PAFTFGKDNHTAEFLKKFPLGKVPAFETKTANAC 65
Query: 181 LTESNAIAYYV 213
+ YV
Sbjct: 66 TRAMPLLTTYV 76
Score = 64.9 bits (151), Expect = 5e-11
Identities = 30/74 (40%), Positives = 48/74 (64%)
Frame = +3
Query: 267 WASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVXERI 446
+ +++D ELLPA+ WVFP G+MQ++KQ+ ++A D+ + +L+ LL +TFLV ER+
Sbjct: 75 YVNFADQELLPAAATWVFPTYGMMQYHKQSTDKAMEDVKKYMTMLNDVLLMKTFLVGERV 134
Query: 447 TCRWSLSSVHCCML 488
T CC+L
Sbjct: 135 TL---ADIAVCCVL 145
>SB_47549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 334 SCNSTNRMLNVQSLTYWPP*KYWTDIFSHAPSLLXRESLVDGHCLQYT 477
+ N T+ N L+ +P KY+ D F++A L R S+++ HC+ T
Sbjct: 209 TANITDLPRNSSKLSCFPEQKYYLDEFAYARRYLSRLSIIEIHCIWQT 256
>SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)
Length = 505
Score = 30.7 bits (66), Expect = 0.93
Identities = 18/71 (25%), Positives = 30/71 (42%)
Frame = +1
Query: 16 NFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESN 195
N +K + Q + K+ P V GE N + +KK +P GK + + +
Sbjct: 105 NIGKFKMVWIDQIDESTKKLKPKMVAGEDNGFVNAIKKVSLEDIPEGNGPSGKAIREKRS 164
Query: 196 AIAYYVANESL 228
I + N+SL
Sbjct: 165 IIVNDIENDSL 175
>SB_13066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 200 SLTTLPMKVSAEEIWLPKPCLAVGI 274
+LTTLP ++ E++W+ C +GI
Sbjct: 645 ALTTLPTPITVEQLWIKDVCNEIGI 669
>SB_51105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1280
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/85 (20%), Positives = 40/85 (47%)
Frame = -1
Query: 364 RSTFCLLNCMIPR*GKTQAQEAGSSSLSDHDAHCQTRLG*PDLLRGDFHWQRSKRWHCFQ 185
R+ +C+L+ M+P + + A + + H A Q L + + +W+++ +
Sbjct: 33 RAAYCILSPMVPGGERKNGRSASTEMAATHRAPKQWSLSKTETITSFENWKQN-LMYTLS 91
Query: 184 LEAPFHRHFRMQALFRQETSSRSLR 110
L+ F + A ++++T + LR
Sbjct: 92 LDTNFSTYLADGATWKRKTKTEPLR 116
>SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)
Length = 364
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 145 LFRQETSSRSLRTCWSRQIRNSVLLSHQSRNIVRRSTLYK 26
+FR + + + S ++ N V +SHQSR IV T+ K
Sbjct: 102 VFRSKQQAPNKAVGRSDEVTNEVAVSHQSRRIVESETVRK 141
>SB_45214| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +2
Query: 197 PSLTTLPMKVSAEEIWLPKPCLAVGIMV*QRTTACFLRLGLPLPWYHAIQQTEC*TC 367
PS+TT +++E +P+P + G + T C L L W A+ C C
Sbjct: 109 PSMTTTYGGITSEARGIPEPIVTTGSAMNDSVTGCSL---LHQMWKKAVSDNFCALC 162
>SB_40685| Best HMM Match : NPIP (HMM E-Value=1.8)
Length = 672
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +3
Query: 429 LVXERITCRWSLSSVHCCMLFSTWLHPASVSSLINVSALGPDRRXPAG 572
L ER R ++ C LF++W + + +SAL P PAG
Sbjct: 15 LFFERPIRRPRFVALRQCSLFNSWYNLEQEHQITTISALPPIATLPAG 62
>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2179
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -1
Query: 571 PAGXRRSGPNAETFISDETDAGCSHVLKSMQQCTEDND 458
PA + S P E DE DAG S + EDND
Sbjct: 134 PADLQPSSPGVELEYMDELDAGVGKEGTSEEDDKEDND 171
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,836,214
Number of Sequences: 59808
Number of extensions: 420906
Number of successful extensions: 1211
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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