Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30854.Seq
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72507-7|CAD56569.1| 373|Caenorhabditis elegans Hypothetical pr... 54 1e-07
Z72507-6|CAA96631.1| 398|Caenorhabditis elegans Hypothetical pr... 54 1e-07
Z72507-15|CAJ55245.1| 365|Caenorhabditis elegans Hypothetical p... 37 0.013
AC024200-13|AAF36004.1| 214|Caenorhabditis elegans Glutathione ... 33 0.12
U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical pr... 31 0.62
U34596-1|AAA97605.1| 570|Caenorhabditis elegans SMA-4 protein. 31 0.82
U00066-5|AAA50739.2| 565|Caenorhabditis elegans Small protein 4... 31 0.82
Z93377-6|CAB07572.2| 254|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z67756-1|CAA91762.1| 157|Caenorhabditis elegans Hypothetical pr... 29 3.3
U53333-12|AAA96165.1| 387|Caenorhabditis elegans Nuclear hormon... 29 3.3
L16622-3|ABC71837.1| 254|Caenorhabditis elegans Hypothetical pr... 28 4.4
L16622-1|ABB51198.1| 537|Caenorhabditis elegans Hypothetical pr... 28 4.4
AF025462-3|AAB71002.1| 309|Caenorhabditis elegans Hypothetical ... 28 4.4
AC024200-14|AAF36005.1| 557|Caenorhabditis elegans Hypothetical... 28 4.4
U41015-5|AAA82310.1| 166|Caenorhabditis elegans Hypothetical pr... 28 5.8
AF016448-13|AAB65963.1| 239|Caenorhabditis elegans Hypothetical... 28 5.8
L15314-4|AAF99988.2| 618|Caenorhabditis elegans Hypothetical pr... 27 7.7
>Z72507-7|CAD56569.1| 373|Caenorhabditis elegans Hypothetical
protein F17C11.9b protein.
Length = 373
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/92 (31%), Positives = 51/92 (55%)
Frame = +3
Query: 264 QWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVXER 443
QW +++ LLPA +V P + F+K+ VE+ K++L L+VLD L+ +T+LV ER
Sbjct: 50 QWLQFAEGYLLPAVLGYVLPSVSAANFDKKTVEQYKNELNGQLQVLDRVLVKKTYLVGER 109
Query: 444 ITCRWSLSSVHCCMLFSTWLHPASVSSLINVS 539
++ ++ F L + S++NV+
Sbjct: 110 LSLADVSVALDLLPAFQYVLDANARKSIVNVT 141
>Z72507-6|CAA96631.1| 398|Caenorhabditis elegans Hypothetical
protein F17C11.9a protein.
Length = 398
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/92 (31%), Positives = 51/92 (55%)
Frame = +3
Query: 264 QWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVXER 443
QW +++ LLPA +V P + F+K+ VE+ K++L L+VLD L+ +T+LV ER
Sbjct: 75 QWLQFAEGYLLPAVLGYVLPSVSAANFDKKTVEQYKNELNGQLQVLDRVLVKKTYLVGER 134
Query: 444 ITCRWSLSSVHCCMLFSTWLHPASVSSLINVS 539
++ ++ F L + S++NV+
Sbjct: 135 LSLADVSVALDLLPAFQYVLDANARKSIVNVT 166
Score = 31.5 bits (68), Expect = 0.47
Identities = 25/75 (33%), Positives = 36/75 (48%)
Frame = +1
Query: 1 YTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVL 180
Y +NFR K LIAA+ + V +A G+ ++ KFP G PAFE G L
Sbjct: 6 YGNKDNFRTQKVLIAAKLANKTVTLA-----GDAAPAD----KFPLGVTPAFE---GDAL 53
Query: 181 LTESNAIAYYVANES 225
L + +I ++ S
Sbjct: 54 LFGAESIGLHLTGTS 68
>Z72507-15|CAJ55245.1| 365|Caenorhabditis elegans Hypothetical
protein F17C11.9c protein.
Length = 365
Score = 36.7 bits (81), Expect = 0.013
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 264 QWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALK-VLDGH 410
QW +++ LLPA +V P + F+K+ VE+ K++L L+ VLD +
Sbjct: 75 QWLQFAEGYLLPAVLGYVLPSVSAANFDKKTVEQYKNELNGQLQYVLDAN 124
Score = 31.5 bits (68), Expect = 0.47
Identities = 25/75 (33%), Positives = 36/75 (48%)
Frame = +1
Query: 1 YTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVL 180
Y +NFR K LIAA+ + V +A G+ ++ KFP G PAFE G L
Sbjct: 6 YGNKDNFRTQKVLIAAKLANKTVTLA-----GDAAPAD----KFPLGVTPAFE---GDAL 53
Query: 181 LTESNAIAYYVANES 225
L + +I ++ S
Sbjct: 54 LFGAESIGLHLTGTS 68
>AC024200-13|AAF36004.1| 214|Caenorhabditis elegans Glutathione
s-transferase protein43 protein.
Length = 214
Score = 33.5 bits (73), Expect = 0.12
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 1 YTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSE-DFLKKFPAGKVPAFESADGKV 177
Y+Y + A++ IA D + P +F E +K+ +F+K PA KVP +
Sbjct: 7 YSYWRSSCAWRVRIALALKNIDYEYRPIDLFSEESKNNAEFVKHNPAKKVPTL--VINGL 64
Query: 178 LLTESNAIAYYV 213
LTES AI Y+
Sbjct: 65 SLTESLAIIEYL 76
>U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical
protein ZK430.1 protein.
Length = 1650
Score = 31.1 bits (67), Expect = 0.62
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -1
Query: 226 DFHWQRSKRWHCFQLEAPFHRHFRMQALFRQETSSR-SLRTCWSRQIRNSV 77
DF W+RSK W Q ++ R SS+ S+ TC + IR++V
Sbjct: 153 DFDWKRSKEWQFMQQFTKTETPIPFTSIARATLSSKHSIITCITDHIRHAV 203
>U34596-1|AAA97605.1| 570|Caenorhabditis elegans SMA-4 protein.
Length = 570
Score = 30.7 bits (66), Expect = 0.82
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = -1
Query: 547 PNAETFISDETDA--GCSHVLKSMQQCTEDNDH-RQVILSXTRKVRVRRCPSSTFKAASR 377
PNA ++ D+ SHVL+ QQ ED+D R+ I S +K++ +R A
Sbjct: 135 PNAGAVLTTAMDSCQQISHVLQCYQQGGEDSDFVRKAIESLVKKLKDKRIELDALITAVT 194
Query: 376 SDFARSTFCL 347
S+ + T C+
Sbjct: 195 SNGKQPTGCV 204
>U00066-5|AAA50739.2| 565|Caenorhabditis elegans Small protein 4,
isoform a protein.
Length = 565
Score = 30.7 bits (66), Expect = 0.82
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = -1
Query: 547 PNAETFISDETDA--GCSHVLKSMQQCTEDNDH-RQVILSXTRKVRVRRCPSSTFKAASR 377
PNA ++ D+ SHVL+ QQ ED+D R+ I S +K++ +R A
Sbjct: 130 PNAGAVLTTAMDSCQQISHVLQCYQQGGEDSDFVRKAIESLVKKLKDKRIELDALITAVT 189
Query: 376 SDFARSTFCL 347
S+ + T C+
Sbjct: 190 SNGKQPTGCV 199
>Z93377-6|CAB07572.2| 254|Caenorhabditis elegans Hypothetical
protein F13A7.10 protein.
Length = 254
Score = 29.1 bits (62), Expect = 2.5
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Frame = +1
Query: 10 PENFRAYKALI--AAQYS--GTDVKVAPNFVFGET--NKSEDFLKKFPAGKVPAFESADG 171
P FR Y AAQ + VK P+ V K + + K G+VP E A+G
Sbjct: 24 PNTFRIYSMRFCPAAQRALIYASVKKIPSEVININLQQKPDWYFTKNYKGQVPTLEHAEG 83
Query: 172 KVLLTESNAIAYYV 213
K L+ ES I Y+
Sbjct: 84 KKLVIESAVIPEYL 97
>Z67756-1|CAA91762.1| 157|Caenorhabditis elegans Hypothetical
protein R07A4.2 protein.
Length = 157
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = -2
Query: 132 KLLQEVFGLVGLAKYEIRCYFHISPGILCGDQRFISAEVFRISV 1
K+LQ +FG + L+ CY + + CG++ F S++VF++ V
Sbjct: 22 KILQLIFGFINLSA-NYWCYPN-QHFLYCGERYFTSSQVFQLIV 63
>U53333-12|AAA96165.1| 387|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 78 protein.
Length = 387
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 273 SWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAAL 392
S+ ++ +L A C W + + + +K+NV + KS L+ L
Sbjct: 298 SFEENAILKALCCWQTAHFKLEECDKENVRKQKSLLVQCL 337
>L16622-3|ABC71837.1| 254|Caenorhabditis elegans Hypothetical
protein C02D5.3c protein.
Length = 254
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 106 KSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYV 213
K + F K G+VPA E +GK ++ ES I Y+
Sbjct: 62 KPDWFFTKHYKGQVPALEHDEGKKIVIESAVIPEYL 97
>L16622-1|ABB51198.1| 537|Caenorhabditis elegans Hypothetical
protein C02D5.3a protein.
Length = 537
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 106 KSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYV 213
K + F K G+VPA E +GK ++ ES I Y+
Sbjct: 345 KPDWFFTKHYKGQVPALEHDEGKKIVIESAVIPEYL 380
>AF025462-3|AAB71002.1| 309|Caenorhabditis elegans Hypothetical
protein K10F12.4a protein.
Length = 309
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1
Query: 118 FLKKFPAGKVPAFESADGKVLLTESNAIAYYV 213
+L K P G+VPA E +GKV + ESN I Y+
Sbjct: 138 YLPKSPIGRVPALE-INGKV-VWESNVIVEYL 167
>AC024200-14|AAF36005.1| 557|Caenorhabditis elegans Hypothetical
protein Y71F9AL.4 protein.
Length = 557
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +3
Query: 174 GASN*KQCHRLLRCQ*KSPRRRSGYPSRVWQWASWSDSELLPASCAWVFPYLGIMQFNKQ 353
G S K HR+L+ K+ + S +QWASW D +P SC L ++ +K+
Sbjct: 308 GKSKDKITHRVLKVVVKATGQESKLNH--YQWASWPDHG-MPDSCDTALRLLSAVKKDKK 364
Query: 354 NV 359
V
Sbjct: 365 PV 366
>U41015-5|AAA82310.1| 166|Caenorhabditis elegans Hypothetical
protein F20B6.1 protein.
Length = 166
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +3
Query: 174 GASN*KQCHRLLRCQ*KSPRRRSGYPSRVWQWASWSDSELLPASCAWVFPYLGIMQFNKQ 353
G S K HR+L+ K+ + S +QWASW D +P SC L ++ +K+
Sbjct: 53 GKSKDKITHRVLKVVVKATGQESKLNH--YQWASWPDHG-MPDSCDTAHRLLSAVKKDKK 109
Query: 354 NV 359
V
Sbjct: 110 PV 111
>AF016448-13|AAB65963.1| 239|Caenorhabditis elegans Hypothetical
protein F41E6.1 protein.
Length = 239
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 133 ETSSRSLRTCWSRQIRNSVLLSHQSRNIVR 44
ET +R CWSR N+V R++VR
Sbjct: 167 ETGGAIVRDCWSRVFSNAVKNPRARRDVVR 196
>L15314-4|AAF99988.2| 618|Caenorhabditis elegans Hypothetical
protein K06H7.3 protein.
Length = 618
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 538 ETFISDETDAGCSHVLKSMQQCTEDND 458
E IS ETDAG S +L+ + +ED+D
Sbjct: 33 EVLISAETDAGMSLMLEWKMRLSEDSD 59
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,400,179
Number of Sequences: 27780
Number of extensions: 307313
Number of successful extensions: 884
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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