Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30854.Seq
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g57720.1 68414.m06549 elongation factor 1B-gamma, putative / ... 71 4e-13
At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative / ... 70 1e-12
At1g02930.1 68414.m00260 glutathione S-transferase, putative sim... 44 6e-05
At4g02520.1 68417.m00345 glutathione S-transferase, putative 43 1e-04
At2g02930.1 68415.m00241 glutathione S-transferase, putative 42 2e-04
At1g02920.1 68414.m00259 glutathione S-transferase, putative sim... 40 0.001
At1g02950.2 68414.m00263 glutathione S-transferase, putative sim... 38 0.004
At1g02950.1 68414.m00262 glutathione S-transferase, putative sim... 38 0.004
At2g02380.1 68415.m00176 glutathione S-transferase, putative sim... 38 0.005
At1g02940.1 68414.m00261 glutathione S-transferase, putative sim... 38 0.007
At2g02390.2 68415.m00177 glutathione S-transferase zeta 1 (GSTZ1... 36 0.016
At2g02390.1 68415.m00178 glutathione S-transferase zeta 1 (GSTZ1... 36 0.016
At2g02390.3 68415.m00179 glutathione S-transferase zeta 1 (GSTZ1... 33 0.14
At2g33000.1 68415.m04044 ubiquitin-associated (UBA)/TS-N domain-... 30 1.3
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 30 1.3
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 30 1.3
At5g46550.1 68418.m05731 DNA-binding bromodomain-containing prot... 29 1.8
At1g16900.1 68414.m02047 curculin-like (mannose-binding) lectin ... 29 1.8
At4g22130.1 68417.m03199 protein kinase family protein contains ... 29 3.1
At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR... 28 5.4
At4g35790.3 68417.m05086 phospholipase D delta / PLD delta (PLDD... 27 9.5
At4g35790.2 68417.m05085 phospholipase D delta / PLD delta (PLDD... 27 9.5
At4g35790.1 68417.m05084 phospholipase D delta / PLD delta (PLDD... 27 9.5
At3g49210.1 68416.m05378 expressed protein 27 9.5
At2g18480.1 68415.m02153 mannitol transporter, putative similar ... 27 9.5
At1g47220.1 68414.m05227 cyclin, putative similar to cyclin A-li... 27 9.5
>At1g57720.1 68414.m06549 elongation factor 1B-gamma, putative /
eEF-1B gamma, putative similar to elongation factor 1B
gamma GI:3868758 from [Oryza sativa]
Length = 413
Score = 71.3 bits (167), Expect = 4e-13
Identities = 41/89 (46%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Frame = +1
Query: 1 YTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVL 180
+TY N A KALIAA+Y+G ++ + +F G TNKS +FLK P GKVP E+ +G +
Sbjct: 6 HTYKGNKGANKALIAAEYAGVKIEESADFQMGVTNKSPEFLKMNPIGKVPVLETPEGPIF 65
Query: 181 LTESNAIAYYVA----NESLRGGDLATQA 255
ESNAIA YV+ + SL G L A
Sbjct: 66 --ESNAIARYVSRKNGDNSLNGSSLIEYA 92
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +3
Query: 252 SRVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFL 431
+ + QW +S E+ W P +G F+ E A S L L+ L+ HL + TFL
Sbjct: 92 AHIEQWIDFSSLEIDANMLKWFAPRMGYAPFSAPAEEAAISALKRGLEALNTHLASNTFL 151
Query: 432 VXERIT 449
V +T
Sbjct: 152 VGHSVT 157
>At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative /
eEF-1B gamma, putative Similar to elongation factor
1-gamma (gb|EF1G_XENLA). ESTs
gb|T20564,gb|T45940,gb|T04527 come from this gene
Length = 414
Score = 69.7 bits (163), Expect = 1e-12
Identities = 42/89 (47%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Frame = +1
Query: 1 YTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVL 180
+TY N A KALIAA+Y G + V +F G TNK+ FLK P GKVP E+ +G V
Sbjct: 6 HTYKGNKSAEKALIAAEYVGVQIDVPSDFQMGVTNKTPAFLKMNPIGKVPVLETPEGSVF 65
Query: 181 LTESNAIAYYVA----NESLRGGDLATQA 255
ESNAIA YV+ + SL G L A
Sbjct: 66 --ESNAIARYVSRLNGDNSLNGSSLIEYA 92
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/66 (33%), Positives = 34/66 (51%)
Frame = +3
Query: 252 SRVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFL 431
+++ QW +S E+ + W P +G M ++ E A S L AL L+ HL + T+L
Sbjct: 92 AQIEQWIDFSSLEIYASILRWFGPRMGFMPYSAPAEEGAISTLKRALDALNTHLTSNTYL 151
Query: 432 VXERIT 449
V IT
Sbjct: 152 VGHSIT 157
>At1g02930.1 68414.m00260 glutathione S-transferase, putative
similar to glutathione S-transferase GI:860955 from
[Hyoscyamus muticus]
Length = 208
Score = 44.4 bits (100), Expect = 6e-05
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +1
Query: 1 YTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVL 180
+ +P + + LIA D + + +K E F+ + P GKVPAFE D K+
Sbjct: 7 FGHPASTATRRVLIALHEKNVDFEFVHVELKDGEHKKEPFILRNPFGKVPAFEDGDFKIF 66
Query: 181 LTESNAIAYYVANE-SLRGGDL 243
ES AI Y+A+E S +G +L
Sbjct: 67 --ESRAITQYIAHEFSDKGNNL 86
>At4g02520.1 68417.m00345 glutathione S-transferase, putative
Length = 212
Score = 43.2 bits (97), Expect = 1e-04
Identities = 25/73 (34%), Positives = 38/73 (52%)
Frame = +1
Query: 1 YTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVL 180
+ +P + + LIA D ++ + +K E FL + P G+VPAFE DG +
Sbjct: 7 FGHPASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFE--DGDLK 64
Query: 181 LTESNAIAYYVAN 219
L ES AI Y+A+
Sbjct: 65 LFESRAITQYIAH 77
>At2g02930.1 68415.m00241 glutathione S-transferase, putative
Length = 212
Score = 42.3 bits (95), Expect = 2e-04
Identities = 25/73 (34%), Positives = 38/73 (52%)
Frame = +1
Query: 1 YTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVL 180
+ +P + + LIA D ++ + +K E FL + P G+VPAFE DG +
Sbjct: 7 FGHPASTSTRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFE--DGDLK 64
Query: 181 LTESNAIAYYVAN 219
L ES AI Y+A+
Sbjct: 65 LFESRAITQYIAH 77
>At1g02920.1 68414.m00259 glutathione S-transferase, putative
similar to glutathione S-transferase GI:860955 from
[Hyoscyamus muticus]; supported by cDNA GI:443697.
Length = 209
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/73 (34%), Positives = 36/73 (49%)
Frame = +1
Query: 1 YTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVL 180
+ +P + + LIA D + + +K E F+ + P GKVPAFE DG
Sbjct: 7 FGHPASTATRRVLIALHEKNLDFEFVHIELKDGEHKKEPFIFRNPFGKVPAFE--DGDFK 64
Query: 181 LTESNAIAYYVAN 219
L ES AI Y+A+
Sbjct: 65 LFESRAITQYIAH 77
>At1g02950.2 68414.m00263 glutathione S-transferase, putative
similar to glutathione-S-transferase GI:169887 from
[Silene vulgaris]
Length = 245
Score = 38.3 bits (85), Expect = 0.004
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 103 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN-ESLRGGDL 243
+K+E FL P G+VP FE DG V L ES AI Y+A S RG L
Sbjct: 64 HKTEPFLSLNPFGQVPVFE--DGSVKLYESRAITQYIAYVHSSRGTQL 109
>At1g02950.1 68414.m00262 glutathione S-transferase, putative
similar to glutathione-S-transferase GI:169887 from
[Silene vulgaris]
Length = 243
Score = 38.3 bits (85), Expect = 0.004
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 103 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN-ESLRGGDL 243
+K+E FL P G+VP FE DG V L ES AI Y+A S RG L
Sbjct: 62 HKTEPFLSLNPFGQVPVFE--DGSVKLYESRAITQYIAYVHSSRGTQL 107
>At2g02380.1 68415.m00176 glutathione S-transferase, putative
similar to gi:167970 gb:AAA72320 gb:AY052332
Length = 223
Score = 37.9 bits (84), Expect = 0.005
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +1
Query: 1 YTYPENFRAYKALIAAQYSGTDVKVAP-NFVFGETNKSEDFLKKFPAGKVPAFESADGKV 177
Y+Y + A++ IA G D + P N + G+ + S DF K P G VPA DG V
Sbjct: 15 YSYWRSSCAHRVRIALTLKGLDYEYIPVNLLKGDQSDS-DFKKINPMGTVPAL--VDGDV 71
Query: 178 LLTESNAIAYYV 213
++ +S AI Y+
Sbjct: 72 VINDSFAIIMYL 83
>At1g02940.1 68414.m00261 glutathione S-transferase, putative
similar to glutathione S-transferase GI:860955 from
[Hyoscyamus muticus]
Length = 256
Score = 37.5 bits (83), Expect = 0.007
Identities = 26/72 (36%), Positives = 36/72 (50%)
Frame = +1
Query: 1 YTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVL 180
Y Y N R A++ + D + N + G+ K FL P G+VP F DG +
Sbjct: 44 YPYSTNTRRVLAVLHEKGLSYD-PITVNLIAGD-QKKPSFLAINPFGQVPVF--LDGGLK 99
Query: 181 LTESNAIAYYVA 216
LTES AI+ Y+A
Sbjct: 100 LTESRAISEYIA 111
>At2g02390.2 68415.m00177 glutathione S-transferase zeta 1 (GSTZ1)
(GST18) identical to SP|Q9ZVQ3|GTZ1_ARATH Glutathione
S-transferase zeta-class 1 (EC 2.5.1.18) (AtGSTZ1)
(Maleylacetone isomerase) (EC 5.2.1.-) (MAI)
{Arabidopsis thaliana}; contains Pfam profiles PF02798:
Glutathione S-transferase, N-terminal domain and
PF00043:Glutathione S-transferase, C-terminal domain
Length = 191
Score = 36.3 bits (80), Expect = 0.016
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +1
Query: 1 YTYPENFRAYKALIAAQYSGTDVKVAP-NFVFGETNKSEDFLKKFPAGKVPAFESADGKV 177
Y+Y + A++ IA G D + P N + G+ S DF K P G VPA DG V
Sbjct: 12 YSYWRSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDS-DFKKINPMGTVPAL--VDGDV 68
Query: 178 LLTESNAIAYYV 213
++ +S AI Y+
Sbjct: 69 VINDSFAIIMYL 80
>At2g02390.1 68415.m00178 glutathione S-transferase zeta 1 (GSTZ1)
(GST18) identical to SP|Q9ZVQ3|GTZ1_ARATH Glutathione
S-transferase zeta-class 1 (EC 2.5.1.18) (AtGSTZ1)
(Maleylacetone isomerase) (EC 5.2.1.-) (MAI)
{Arabidopsis thaliana}; contains Pfam profiles PF02798:
Glutathione S-transferase, N-terminal domain and
PF00043:Glutathione S-transferase, C-terminal domain
Length = 221
Score = 36.3 bits (80), Expect = 0.016
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +1
Query: 1 YTYPENFRAYKALIAAQYSGTDVKVAP-NFVFGETNKSEDFLKKFPAGKVPAFESADGKV 177
Y+Y + A++ IA G D + P N + G+ S DF K P G VPA DG V
Sbjct: 12 YSYWRSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDS-DFKKINPMGTVPAL--VDGDV 68
Query: 178 LLTESNAIAYYV 213
++ +S AI Y+
Sbjct: 69 VINDSFAIIMYL 80
>At2g02390.3 68415.m00179 glutathione S-transferase zeta 1 (GSTZ1)
(GST18) identical to SP|Q9ZVQ3|GTZ1_ARATH Glutathione
S-transferase zeta-class 1 (EC 2.5.1.18) (AtGSTZ1)
(Maleylacetone isomerase) (EC 5.2.1.-) (MAI)
{Arabidopsis thaliana}; contains Pfam profiles PF02798:
Glutathione S-transferase, N-terminal domain and
PF00043:Glutathione S-transferase, C-terminal domain
Length = 228
Score = 33.1 bits (72), Expect = 0.14
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Frame = +1
Query: 1 YTYPENFRAYKALIAAQYSGTDVKVAP-NFVFGETNKS------EDFLKKFPAGKVPAFE 159
Y+Y + A++ IA G D + P N + G+ S +DF K P G VPA
Sbjct: 12 YSYWRSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSVYRFDLQDFKKINPMGTVPAL- 70
Query: 160 SADGKVLLTESNAIAYYV 213
DG V++ +S AI Y+
Sbjct: 71 -VDGDVVINDSFAIIMYL 87
>At2g33000.1 68415.m04044 ubiquitin-associated (UBA)/TS-N
domain-containing protein-related contains weak hit to
Pfam F00627: UBA/TS-N domain; supported by tandem
duplication of ubiquitin-associated (UBA)/TS-N domain
protein (GI:2924790) (TIGR_Ath1:At2g33010) [Arabidopsis
thaliana]
Length = 508
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +1
Query: 328 LVSCNSTNRMLNVQSLTYWPP*KYWTDIFSHAPSLLXRES 447
L++ + N N +S + WPP K W D H + E+
Sbjct: 195 LMASSQVNTQENQESTSVWPPMKTWVDRICHETKVSREEA 234
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 330 QGKGRPKRRKQAVVRCQTMMPTARHGLGSQISSAETFIGNVVSD 199
+G+GRPKR +A+ + G+ ISSA T + V SD
Sbjct: 1449 RGRGRPKRTDKALTPVSLSAVSRTQATGNAISSAATGLDFVSSD 1492
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 330 QGKGRPKRRKQAVVRCQTMMPTARHGLGSQISSAETFIGNVVSD 199
+G+GRPKR +A+ + G+ ISSA T + V SD
Sbjct: 1449 RGRGRPKRTDKALTPVSLSAVSRTQATGNAISSAATGLDFVSSD 1492
>At5g46550.1 68418.m05731 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 494
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 34 ALIAAQYSGTDVKVAPNFVFGETNKSE 114
A++ AQY+GT +K V G+ NK++
Sbjct: 342 AILKAQYAGTIIKAKHRIVLGQNNKAD 368
>At1g16900.1 68414.m02047 curculin-like (mannose-binding) lectin
family protein very low similarity to Ser Thr protein
kinase GI:2598067 from (Zea mays); contains Pfam lectin
(probable mannose binding) domain PF01453
Length = 919
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 236 EIWLPKPCLAVGIMV*QRTTACFLRLGLPLPWYHAIQQTEC*TC 367
E WLP C A GI + AC L +GL + W A + + +C
Sbjct: 276 ECWLPSKCGAFGICEDNQCVACPLGVGL-MGWSKACKPKKVKSC 318
>At4g22130.1 68417.m03199 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 338
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Frame = +1
Query: 22 RAYKALIAAQYSGTDVKVAPNF-----VFGETNKSEDFLKKFPAGKVPAFESADGKVL-L 183
R + A+QY+ + ++VA N + GE + + +FP GK+ A + D L L
Sbjct: 8 RIRSPITASQYTVSSLQVATNSFSQENIIGEGSLGRVYRAEFPNGKIMAIKKIDNAALSL 67
Query: 184 TESNAIAYYVANES 225
E + V+N S
Sbjct: 68 QEEDNFLEAVSNMS 81
>At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1046
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +3
Query: 318 FPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVXERITCRWSLSSV 473
F Y GI FN Q++ER+++ + A + ++ L + RW L +
Sbjct: 38 FSYNGISMFNDQSIERSQTIVPALTGAIKESRISIVVLSKNYASSRWCLDEL 89
>At4g35790.3 68417.m05086 phospholipase D delta / PLD delta
(PLDDELTA) identical to phospholipase D delta SP: Q9C5Y0
from [Arabidopsis thaliana]; supporting cDNA
gi|11761141|dbj|AB031047.1|
Length = 693
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = -1
Query: 277 HDAHCQTRLG*PD----LLRGDFHWQRSKRWHCFQLEAPFHRHFRMQALFR 137
HD HC R+ P L+ + W+++ RW F L H++ AL R
Sbjct: 429 HDLHC--RIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQDDALIR 477
>At4g35790.2 68417.m05085 phospholipase D delta / PLD delta
(PLDDELTA) identical to phospholipase D delta SP: Q9C5Y0
from [Arabidopsis thaliana]; supporting cDNA
gi|11761141|dbj|AB031047.1|
Length = 857
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = -1
Query: 277 HDAHCQTRLG*PD----LLRGDFHWQRSKRWHCFQLEAPFHRHFRMQALFR 137
HD HC R+ P L+ + W+++ RW F L H++ AL R
Sbjct: 429 HDLHC--RIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQDDALIR 477
>At4g35790.1 68417.m05084 phospholipase D delta / PLD delta
(PLDDELTA) identical to phospholipase D delta SP: Q9C5Y0
from [Arabidopsis thaliana]; supporting cDNA
gi|11761141|dbj|AB031047.1|
Length = 868
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = -1
Query: 277 HDAHCQTRLG*PD----LLRGDFHWQRSKRWHCFQLEAPFHRHFRMQALFR 137
HD HC R+ P L+ + W+++ RW F L H++ AL R
Sbjct: 440 HDLHC--RIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQDDALIR 488
>At3g49210.1 68416.m05378 expressed protein
Length = 518
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +3
Query: 264 QWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTF 428
+W +W + P S L ++ K+ ++R K+ L AAL + G + +TF
Sbjct: 361 RWGNWIGYIVFPFSIGLRDDPLQHLRRAKRIIDRKKNSLEAALTFVAGKFILKTF 415
>At2g18480.1 68415.m02153 mannitol transporter, putative similar to
mannitol transporter [Apium graveolens var. dulce]
GI:12004316; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 508
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 245 LPKPCLAVGIMV*QRTTACFLRLGLPLPW 331
LP+ C+++GI++ + CF +L L L W
Sbjct: 152 LPELCISLGILLGYVSNYCFGKLTLKLGW 180
>At1g47220.1 68414.m05227 cyclin, putative similar to cyclin A-like
protein [Nicotiana tabacum] GI:1064931, A-type cyclin
[Catharanthus roseus] GI:2190259; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 327
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 318 FPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFL 431
F Y+ + KQ+V + + D+L AL+ G T TFL
Sbjct: 159 FCYITANTYTKQDVLKMEEDILLALEFELGRPTTNTFL 196
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,722,285
Number of Sequences: 28952
Number of extensions: 295118
Number of successful extensions: 872
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -