Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30853.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    27   2.7  
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    27   2.7  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    27   2.7  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    27   2.7  
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     26   3.6  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   8.4  

>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 445 TIKTSSSSACISPLLDVNLSHIRHNERSSTFRIQFFSSILPQVISPLI 588
           TI  SS  + +  LL  + S +R    SST ++   S I   VISP +
Sbjct: 329 TIGESSFPSSLLSLLTQSFSTVRSTSSSSTDQLTSASPISSSVISPSV 376


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 57  DVDGRLLLYSSCRSAGGSTI**EKSASFYRRLRH*SGKR 173
           D+D R  LYS+   +GGST+       F   LR  SGK+
Sbjct: 291 DIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKK 329


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -2

Query: 570 LWQYAGKK--LDAKGRGSFIVADMGEVYIQQWRDTG 469
           +W   G +  LD++G     V D+G +Y  QWR  G
Sbjct: 410 IWDGNGSREFLDSRGLTDRKVGDLGPIYGFQWRHFG 445


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -2

Query: 264 DYSAKLMSRYNQCNQVQQCRNPTILCIQGISFFHFNDE 151
           D  +   SRYN C   +   +P     +G  F  F DE
Sbjct: 201 DVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDE 238


>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 286 YYILTEERLFSKIDVQIQPV*SSTTMPQSNNFVHSGYI 173
           YY ++  + FS+I VQ+QP  +    P +  F  + ++
Sbjct: 102 YYPISSIKKFSRIPVQLQPPLNKQNFPHNIEFETADFL 139


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 518  MNDPLPFASNFFPAYCHKSSAHLFKQN 598
            +NDP P A+ F  AY   S+  L  Q+
Sbjct: 975  LNDPYPVAARFLDAYPEASTQDLNTQD 1001


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,589,611
Number of Sequences: 5004
Number of extensions: 53235
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)